A830036E02Rik Gene Detail

Summary

• Symbol
  A830036E02Rik
• Name
  RIKEN cDNA A830036E02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3686876
  NCBI Gene: 353123
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:99308069-99313924 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 62.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3686876	lncRNA gene	Chr11:99307782-99316323 (+)
129S1/SvImJ	ENSMUSG00200053725	lncRNA gene	Chr11:96569218-96577743 (+)
A/J	ENSMUSG00195052324	lncRNA gene	Chr11:96277898-96286420 (+)
AKR/J	ENSMUSG00220052893	lncRNA gene	Chr11:96535549-96544085 (+)
BALB/cJ	ENSMUSG00180052725	lncRNA gene	Chr11:96565353-96573890 (+)
C3H/HeJ	ENSMUSG00175052268	lncRNA gene	Chr11:96542746-96551271 (+)
C57BL/6NJ	ENSMUSG00215054307	lncRNA gene	Chr11:96126272-96134813 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002701	antisense lncRNA gene	Chr11:95346587-95356691 (+)
CAST/EiJ	ENSTCUG00005051231	lncRNA gene	Chr11:96062757-96072083 (+)
CBA/J	ENSMUSG00210053509	lncRNA gene	Chr11:96251063-96259601 (+)
DBA/2J	ENSMUSG00185053258	lncRNA gene	Chr11:96592687-96601212 (+)
FVB/NJ	ENSMUSG00205051256	lncRNA gene	Chr11:96458494-96467020 (+)
JF1/MsJ	ENSUMUG00000056563	lncRNA gene	Chr11:96884092-96893205 (+)
LP/J	ENSMUSG00230051248	lncRNA gene	Chr11:97645511-97654036 (+)
NOD/ShiLtJ	ENSMUSG00190052435	lncRNA gene	Chr11:96627585-96636109 (+)
NZO/HlLtJ	ENSMUSG00225052893	lncRNA gene	Chr11:99705091-99713627 (+)
PWK/PhJ	ENSLUMG00010052127	lncRNA gene	Chr11:96443473-96452778 (+)
SPRET/EiJ	ENSMSPG00010051174	lncRNA gene	Chr11:96976468-96985647 (+)
WSB/EiJ	ENSIUOG00005051683	lncRNA gene	Chr11:96403668-96412207 (+)

Homology

• Gene Tree
  A830036E02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving A830036E02Rik
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000084890 (Evidence)
• NCBI Gene
  353123

Representative Sequences			Length	Strain/Species
genomic	353123	NCBI Gene Model | MGI Sequence Detail	5856	C57BL/6J
transcript	NR_153851	RefSeq | MGI Sequence Detail	3413	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:357457 Kumar V, et al., Keratin-dependent thymic stromal lymphopoietin expression suggests a link between skin blistering and atopic disease. J Allergy Clin Immunol. 2016;138(5):1461-1464

TSS for A830036E02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104877	Chr11:99307967-99307978 (+)	-96 bp
Tssr104878	Chr11:99308048-99308094 (+)	2 bp
Tssr104879	Chr11:99308101-99308133 (+)	48 bp
Tssr104880	Chr11:99311839-99311843 (+)	3,772 bp