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Best4-ps Pseudogene Detail
Summary
  • Symbol
    Best4-ps
  • Name
    bestrophin 4, pseudogene
  • Synonyms
    OTTMUSG00000009921, Vmd2l2p
  • Feature Type
    pseudogene
  • IDs
    MGI:3663793
    NCBI Gene: 230664
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:117002454-117005482 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 53.41 cM
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3663793
 pseudogene Chr4:117002454-117005834 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040372
 pseudogene Chr4:118107942-118111322 (+)
A/J MGP_AJ_G0040349
 pseudogene Chr4:113555970-113559357 (+)
AKR/J MGP_AKRJ_G0040278
 pseudogene Chr4:116035840-116039220 (+)
BALB/cJ MGP_BALBcJ_G0040352
 pseudogene Chr4:114185603-114188983 (+)
C3H/HeJ MGP_C3HHeJ_G0039976
 pseudogene Chr4:117601792-117605172 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040954
 pseudogene Chr4:122664775-122668155 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037348
 pseudogene Chr4:107597602-107601073 (+)
CAST/EiJ MGP_CASTEiJ_G0039049
 pseudogene Chr4:114819034-114822397 (+)
CBA/J MGP_CBAJ_G0039941
 pseudogene Chr4:126017545-126020925 (+)
DBA/2J MGP_DBA2J_G0040147
 pseudogene Chr4:114192131-114195518 (+)
FVB/NJ MGP_FVBNJ_G0040103
 pseudogene Chr4:112690617-112693997 (+)
LP/J MGP_LPJ_G0040193
 pseudogene Chr4:118286994-118290374 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0040094
 pseudogene Chr4:130969088-130972468 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0041045
 pseudogene Chr4:117182370-117185750 (+)
PWK/PhJ MGP_PWKPhJ_G0038739
 pseudogene Chr4:110988873-110992231 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038443
 pseudogene Chr4:113485069-113488523 (+)
WSB/EiJ MGP_WSBEiJ_G0039291
 pseudogene Chr4:117050833-117054220 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Best4-ps
  • Find Mice (IMSR)
    3 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 230664 NCBI Gene Model | MGI Sequence Detail 3029 C57BL/6J ±  kb
For the selected sequence
Other
Accession IDs
less
MGI:3650717
References
more
  • Summaries
    All 13
    Phenotypes 6
  • Earliest
    J:98703 Stohr H, et al., Three novel human VMD2-like genes are members of the evolutionary highly conserved RFP-TM family. Eur J Hum Genet. 2002 Apr;10(4):281-4
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory