Gm12299 Gene Detail

Summary

• Symbol
  Gm12299
• Name
  predicted gene 12299

• Feature Type
  lncRNA gene
• IDs
  MGI:3652304
  NCBI Gene: 115487731
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:66892912-66902451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 40.59 cM

Strain
Comparison

• SNPs within 2kb
  371 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652304	lncRNA gene	Chr11:66892912-66903024 (+)
129S1/SvImJ	ENSMUSG00200050114	lncRNA gene	Chr11:63840111-63849684 (+)
A/J	ENSMUSG00195053031	lncRNA gene	Chr11:63860510-63870051 (+)
AKR/J	ENSMUSG00220054227	lncRNA gene	Chr11:63976038-63985578 (+)
BALB/cJ	ENSMUSG00180053748	lncRNA gene	Chr11:63926603-63936182 (+)
C3H/HeJ	ENSMUSG00175054409	lncRNA gene	Chr11:63876848-63886393 (+)
C57BL/6NJ	ENSMUSG00215055170	lncRNA gene	Chr11:63660832-63670371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013315	unclassified non-coding RNA gene	Chr11:61721897-61730934 (+)
CAST/EiJ	ENSTCUG00005053643	lncRNA gene	Chr11:63411368-63420962 (+)
CBA/J	ENSMUSG00210054441	lncRNA gene	Chr11:63731134-63740716 (+)
DBA/2J	ENSMUSG00185056852	lncRNA gene	Chr11:63925309-63934885 (+)
FVB/NJ	ENSMUSG00205053928	lncRNA gene	Chr11:63824516-63834099 (+)
JF1/MsJ	ENSUMUG00000057193	lncRNA gene	Chr11:64321063-64330488 (+)
LP/J	ENSMUSG00230053881	lncRNA gene	Chr11:65050554-65060128 (+)
NOD/ShiLtJ	ENSMUSG00190054133	lncRNA gene	Chr11:63958077-63967672 (+)
NZO/HlLtJ	ENSMUSG00225047688	lncRNA gene	Chr11:67230357-67239896 (+)
PWK/PhJ	ENSLUMG00010053666	lncRNA gene	Chr11:63839106-63848869 (+)
SPRET/EiJ	ENSMSPG00010049034	lncRNA gene	Chr11:64572603-64581727 (+)
WSB/EiJ	ENSIUOG00005052929	lncRNA gene	Chr11:63862249-63871811 (+)

Homology

• Gene Tree
  Gm12299
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm12299
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085926 (Evidence)
• NCBI Gene
  115487731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085926	Ensembl Gene Model | MGI Sequence Detail	9540	C57BL/6J
transcript	ENSMUST00000138819	Ensembl | MGI Sequence Detail	2327	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12299:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102148	Chr11:66901453-66901464 (+)	8,547 bp