Btf3-ps7 Pseudogene Detail

Summary

• Symbol
  Btf3-ps7
• Name
  basic transcription factor 3, pseudogene 7
• Synonyms
  Gm12142

• Feature Type
  pseudogene
• IDs
  MGI:3652294
  NCBI Gene: 100039292
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:41481949-41482861 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 24.61 cM

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652294	pseudogene	Chr11:41481949-41482861 (+)
129S1/SvImJ	ENSMUSG00200007225	pseudogene	Chr11:38536774-38537686 (+)
A/J	ENSMUSG00195007249	pseudogene	Chr11:38488850-38489762 (+)
AKR/J	ENSMUSG00220003343	pseudogene	Chr11:38677841-38678753 (+)
BALB/cJ	ENSMUSG00180001782	pseudogene	Chr11:38481094-38482006 (+)
C3H/HeJ	ENSMUSG00175003841	pseudogene	Chr11:38482650-38483562 (+)
C57BL/6NJ	ENSMUSG00215010309	pseudogene	Chr11:38418678-38419590 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009564	pseudogene	Chr11:36906899-36907745 (+)
CAST/EiJ	ENSTCUG00005013056	pseudogene	Chr11:38209307-38210218 (+)
CBA/J	ENSMUSG00210006890	pseudogene	Chr11:38371975-38372887 (+)
DBA/2J	ENSMUSG00185010439	pseudogene	Chr11:38533533-38534445 (+)
FVB/NJ	ENSMUSG00205012151	pseudogene	Chr11:38517462-38518374 (+)
JF1/MsJ	ENSUMUG00000005230	pseudogene	Chr11:38760898-38761806 (+)
LP/J	ENSMUSG00230004158	pseudogene	Chr11:39701195-39702107 (+)
NOD/ShiLtJ	ENSMUSG00190007380	pseudogene	Chr11:38597837-38598749 (+)
NZO/HlLtJ	ENSMUSG00225036407	pseudogene	Chr11:41638282-41639194 (+)
PWK/PhJ	ENSLUMG00010007399	pseudogene	Chr11:38356149-38357057 (+)
SPRET/EiJ	ENSMSPG00010002281	pseudogene	Chr11:38918891-38919822 (+)
WSB/EiJ	ENSIUOG00005002099	pseudogene	Chr11:38345940-38346851 (+)

Homology

• Gene Tree
  Btf3-ps7
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Btf3-ps7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000081847 (Evidence)
• NCBI Gene
  100039292

Representative Sequences			Length	Strain/Species
genomic	100039292	NCBI Gene Model | MGI Sequence Detail	913	C57BL/6J

Other
Accession IDs

MGI:6450946

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Btf3-ps7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100973	Chr11:41481837-41481842 (+)	-109 bp