Vamp7-ps Pseudogene Detail

Summary

• Symbol
  Vamp7-ps
• Name
  vesicle-associated membrane protein 7, pseudogene
• Synonyms
  Sybl1-ps

• Feature Type
  pseudogene
• IDs
  MGI:3652239
  NCBI Gene: 664901
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:173888412-173889066 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 97.81 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652239	pseudogene	Chr2:173887794-173889170 (-)
129S1/SvImJ	ENSMUSG00200040844	pseudogene	Chr2:170825428-170826082 (-)
A/J	ENSMUSG00195026109	pseudogene	Chr2:171153985-171154639 (-)
AKR/J	ENSMUSG00220035276	pseudogene	Chr2:170448275-170448929 (-)
BALB/cJ	ENSMUSG00180039622	pseudogene	Chr2:170586925-170587579 (-)
C3H/HeJ	ENSMUSG00175046175	pseudogene	Chr2:171359002-171359656 (-)
C57BL/6NJ	ENSMUSG00215030261	pseudogene	Chr2:170786224-170786878 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010710	pseudogene	Chr2:166014636-166015298 (-)
CAST/EiJ	ENSTCUG00005009332	pseudogene	Chr2:169690589-169691250 (-)
CBA/J	ENSMUSG00210043111	pseudogene	Chr2:171268985-171269639 (-)
DBA/2J	ENSMUSG00185026072	pseudogene	Chr2:170982821-170983475 (-)
FVB/NJ	ENSMUSG00205027120	pseudogene	Chr2:170039309-170039963 (-)
JF1/MsJ	ENSUMUG00000049116	pseudogene	Chr2:170674494-170675155 (-)
LP/J	ENSMUSG00230012385	pseudogene	Chr2:172561717-172562371 (-)
NOD/ShiLtJ	ENSMUSG00190044112	pseudogene	Chr2:170666133-170666787 (-)
NZO/HlLtJ	ENSMUSG00225003593	pseudogene	Chr2:180553805-180554459 (-)
PWK/PhJ	ENSLUMG00010039356	pseudogene	Chr2:170566275-170566936 (-)
SPRET/EiJ	ENSMSPG00010032094	pseudogene	Chr2:173352349-173353011 (-)
WSB/EiJ	ENSIUOG00005025498	pseudogene	Chr2:170408991-170409645 (-)

Homology

• Gene Tree
  Vamp7-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082519 (Evidence)
• NCBI Gene
  664901

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082519	Ensembl Gene Model | MGI Sequence Detail	655	C57BL/6J
transcript	ENSMUST00000120334	Ensembl | MGI Sequence Detail	655	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-37110, MGI:108073

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:43563 D'Esposito M, et al., Differential expression pattern of XqPAR-linked genes SYBL1 and IL9R correlates with the structure and evolution of the region. Hum Mol Genet. 1997 Oct;6(11):1917-23
• Latest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

TSS for Vamp7-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28002	Chr2:173889143-173889174 (-)	-93 bp