Hnf1aos1 Gene Detail

Summary

• Symbol
  Hnf1aos1
• Name
  HNF1 homeobox A, opposite strand 1
• Synonyms
  Gm13824, Haster, Mi-Lnc70

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3652225
  NCBI Gene: 102638537
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS
• Regulated by
  Rr124128 (1 regulatory region)

Location &
Maps

• Sequence Map
  Chr5:115106802-115135985 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  929 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652225	antisense lncRNA gene	Chr5:115106802-115136105 (+)
129S1/SvImJ	ENSMUSG00200024609	lncRNA gene	Chr5:108849526-108878841 (+)
A/J	ENSMUSG00195040832	lncRNA gene	Chr5:108361358-108390618 (+)
AKR/J	ENSMUSG00220052038	lncRNA gene	Chr5:107878880-107908184 (+)
BALB/cJ	ENSMUSG00180046925	lncRNA gene	Chr5:108500216-108529538 (+)
C3H/HeJ	ENSMUSG00175047378	lncRNA gene	Chr5:110487310-110516597 (+)
C57BL/6NJ	ENSMUSG00215035262	lncRNA gene	Chr5:108507703-108536967 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003740	antisense lncRNA gene	Chr5:107914597-107945631 (+)
CAST/EiJ	ENSTCUG00005033979	lncRNA gene	Chr5:107681009-107711000 (+)
CBA/J	ENSMUSG00210044833	lncRNA gene	Chr5:109239342-109268621 (+)
DBA/2J	ENSMUSG00185055534	lncRNA gene	Chr5:112298329-112327643 (+)
FVB/NJ	ENSMUSG00205052935	lncRNA gene	Chr5:108137866-108167157 (+)
JF1/MsJ	ENSUMUG00000053376	lncRNA gene	Chr5:115114982-115145070 (+)
LP/J	ENSMUSG00230048919	lncRNA gene	Chr5:116387693-116417003 (+)
NOD/ShiLtJ	ENSMUSG00190049241	lncRNA gene	Chr5:108175730-108204984 (+)
NZO/HlLtJ	ENSMUSG00225017693	lncRNA gene	Chr5:124047770-124077081 (+)
PWK/PhJ	ENSLUMG00010040627	lncRNA gene	Chr5:107018712-107048544 (+)
SPRET/EiJ	ENSMSPG00010048138	lncRNA gene	Chr5:110298447-110333213 (+)
WSB/EiJ	ENSIUOG00005044380	lncRNA gene	Chr5:110879533-110908798 (+)

Homology

• Gene Tree
  Hnf1aos1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  7
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  3 involving Hnf1aos1
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  608
• Tissues
  10
• Literature Summary
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  5

• Ensembl
  ENSMUSG00000086054 (Evidence)
• NCBI Gene
  102638537

Representative Sequences			Length	Strain/Species
genomic	102638537	NCBI Gene Model | MGI Sequence Detail	29184	C57BL/6J
transcript	KY468058	GenBank | ENA | DDBJ | MGI Sequence Detail	665	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  Primer pair 2

References

• Summaries
  All 17

  Developmental Gene Expression 3

  Diseases 1

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:332319 Beucher A, et al., The HASTER lncRNA promoter is a cis-acting transcriptional stabilizer of HNF1A. Nat Cell Biol. 2022 Oct;24(10):1528-1540

Hnf1aos1 expression regulated by:

Feature	Feature Type	Location	Reference
Rr124128, regulatory region 124128	promoter	Chr5:115106000-115110601	J:332319

TSS for Hnf1aos1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48194	Chr5:115106818-115106832 (+)	23 bp
Tssr48198	Chr5:115127722-115127742 (+)	20,930 bp