Gm14009 Gene Detail

Summary

• Symbol
  Gm14009
• Name
  predicted gene 14009

• Feature Type
  lncRNA gene
• IDs
  MGI:3652195
  NCBI Gene: 102639741
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:128011656-128047200 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 62.31 cM

Strain
Comparison

• SNPs within 2kb
  998 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652195	lncRNA gene	Chr2:128011656-128047409 (+)
129S1/SvImJ	ENSMUSG00200049393	lncRNA gene	Chr2:125058486-125093684 (+)
A/J	ENSMUSG00195031917	lncRNA gene	Chr2:125085654-125120884 (+)
AKR/J	ENSMUSG00220046406	lncRNA gene	Chr2:124852271-124887469 (+)
BALB/cJ	ENSMUSG00180049418	lncRNA gene	Chr2:124880169-124915369 (+)
C3H/HeJ	ENSMUSG00175048010	lncRNA gene	Chr2:125431193-125466495 (+)
C57BL/6NJ	ENSMUSG00215035064	lncRNA gene	Chr2:124933890-124969128 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005473	lincRNA gene	Chr2:121018568-121032387 (+)
CAST/EiJ	ENSTCUG00005041351	lncRNA gene	Chr2:124219759-124254942 (+)
CBA/J	ENSMUSG00210036763	lncRNA gene	Chr2:125281611-125316921 (+)
DBA/2J	ENSMUSG00185036353	lncRNA gene	Chr2:124935754-124971066 (+)
FVB/NJ	ENSMUSG00205044997	lncRNA gene	Chr2:124106805-124142003 (+)
JF1/MsJ	ENSUMUG00000031778	lncRNA gene	Chr2:124786941-124822235 (+)
LP/J	ENSMUSG00230039458	lncRNA gene	Chr2:126693854-126729054 (+)
NOD/ShiLtJ	ENSMUSG00190016086	lncRNA gene	Chr2:125051696-125086865 (+)
NZO/HlLtJ	ENSMUSG00225027614	lncRNA gene	Chr2:134600069-134635371 (+)
PWK/PhJ	ENSLUMG00010042947	lncRNA gene	Chr2:124680286-124715788 (+)
SPRET/EiJ	ENSMSPG00010034829	lncRNA gene	Chr2:127102818-127138120 (+)
WSB/EiJ	ENSIUOG00005044866	lncRNA gene	Chr2:124863116-124898318 (+)

Homology

• Gene Tree
  Gm14009
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm14009
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4

• Ensembl
  ENSMUSG00000085750 (Evidence)
• NCBI Gene
  102639741

Representative Sequences			Length	Strain/Species
genomic	102639741	NCBI Gene Model | MGI Sequence Detail	35545	C57BL/6J
transcript	AK144611	GenBank | ENA | DDBJ | MGI Sequence Detail	1301	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm14009:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20051	Chr2:128011670-128011679 (+)	19 bp
Tssr20052	Chr2:128032349-128032381 (+)	20,709 bp
Tssr20053	Chr2:128046178-128046185 (+)	34,526 bp
Tssr640	Chr2:128046212-128046230 (+)	34,565 bp
Tssr20054	Chr2:128046252-128046267 (+)	34,604 bp