Gm12420 Pseudogene Detail

Summary

• Symbol
  Gm12420
• Name
  predicted gene 12420

• Feature Type
  pseudogene
• IDs
  MGI:3652148
  NCBI Gene: 624465
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:84616100-84617147 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.92 cM

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652148	pseudogene	Chr4:84616099-84617362 (+)
129S1/SvImJ	ENSMUSG00200000922	pseudogene	Chr4:79540208-79541255 (+)
A/J	ENSMUSG00195006301	pseudogene	Chr4:80138104-80139151 (+)
AKR/J	ENSMUSG00220008120	pseudogene	Chr4:79534685-79535732 (+)
BALB/cJ	ENSMUSG00180008405	pseudogene	Chr4:79102867-79103914 (+)
C3H/HeJ	ENSMUSG00175004146	pseudogene	Chr4:80030703-80031750 (+)
C57BL/6NJ	ENSMUSG00215002302	pseudogene	Chr4:79980822-79981869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011329	pseudogene	Chr4:77359458-77363137 (+)
CAST/EiJ	ENSTCUG00005000926	pseudogene	Chr4:79448216-79449263 (+)
CBA/J	ENSMUSG00210001285	pseudogene	Chr4:79617614-79618661 (+)
DBA/2J	ENSMUSG00185000771	pseudogene	Chr4:80215751-80216798 (+)
FVB/NJ	ENSMUSG00205001444	pseudogene	Chr4:78498801-78499848 (+)
JF1/MsJ	ENSUMUG00000030321	pseudogene	Chr4:80490706-80491753 (+)
LP/J	ENSMUSG00230018483	pseudogene	Chr4:83621663-83622710 (+)
NOD/ShiLtJ	ENSMUSG00190000962	pseudogene	Chr4:79065861-79066908 (+)
NZO/HlLtJ	ENSMUSG00225005594	pseudogene	Chr4:88732249-88733296 (+)
PWK/PhJ	ENSLUMG00010001682	pseudogene	Chr4:78327067-78328116 (+)
SPRET/EiJ	ENSMSPG00010007941	pseudogene	Chr4:79996266-79997305 (+)
WSB/EiJ	ENSIUOG00005009966	pseudogene	Chr4:79400268-79401315 (+)

Homology

• Gene Tree
  Gm12420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12420
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081775 (Evidence)
• NCBI Gene
  624465

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081775	Ensembl Gene Model | MGI Sequence Detail	1048	C57BL/6J
transcript	ENSMUST00000119869	Ensembl | MGI Sequence Detail	1048	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37699	Chr4:84616245-84616263 (+)	154 bp
Tssr37700	Chr4:84616369-84616398 (+)	284 bp
Tssr37701	Chr4:84616541-84616563 (+)	452 bp