Platr8 Gene Detail

Summary

• Symbol
  Platr8
• Name
  pluripotency associated transcript 8
• Synonyms
  Gm13939

• Feature Type
  lncRNA gene
• IDs
  MGI:3652122
  NCBI Gene: 100038454
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:109732741-109743664 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.65 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652122	lncRNA gene	Chr2:109732741-109743713 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015453	unclassified non-coding RNA gene	Chr2:112257025-112267964 (-)
A/J	MGP_AJ_G0015429	unclassified non-coding RNA gene	Chr2:107558266-107569240 (-)
AKR/J	MGP_AKRJ_G0015393	unclassified non-coding RNA gene	Chr2:110580859-110591786 (-)
BALB/cJ	MGP_BALBcJ_G0015392	unclassified non-coding RNA gene	Chr2:107827757-107838674 (-)
C3H/HeJ	MGP_C3HHeJ_G0015215	unclassified non-coding RNA gene	Chr2:110873367-110885016 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015846	unclassified non-coding RNA gene	Chr2:115918822-115929745 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013585	unclassified non-coding RNA gene	Chr2:103112320-103123854 (-)
CAST/EiJ	MGP_CASTEiJ_G0014767	unclassified non-coding RNA gene	Chr2:111376216-111387142 (-)
CBA/J	MGP_CBAJ_G0015196	unclassified non-coding RNA gene	Chr2:119909206-119920123 (-)
DBA/2J	MGP_DBA2J_G0015290	unclassified non-coding RNA gene	Chr2:107057819-107068736 (-)
FVB/NJ	MGP_FVBNJ_G0015297	unclassified non-coding RNA gene	Chr2:105983886-105994803 (-)
LP/J	MGP_LPJ_G0015368	unclassified non-coding RNA gene	Chr2:112441747-112452684 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015321	unclassified non-coding RNA gene	Chr2:124081604-124092546 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015886	unclassified non-coding RNA gene	Chr2:110732175-110743325 (-)
PWK/PhJ	MGP_PWKPhJ_G0014555	unclassified non-coding RNA gene	Chr2:106695366-106706679 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014343	unclassified non-coding RNA gene	Chr2:109959274-109970883 (-)
WSB/EiJ	MGP_WSBEiJ_G0014874	unclassified non-coding RNA gene	Chr2:111491898-111502880 (-)

Homology

• Gene Tree
  Platr8
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  2
• Genomic Mutations
  3 involving Platr8
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000063751 (Evidence)
• NCBI Gene
  100038454

Representative Sequences			Length	Strain/Species
genomic	100038454	NCBI Gene Model | MGI Sequence Detail	10924	C57BL/6J
transcript	NR_033473	RefSeq | MGI Sequence Detail	1349	C57BL/6
polypeptide	Q3UKY8	UniProt | EBI | MGI Sequence Detail	63	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

TSS for Platr8:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25589	Chr2:109743642-109743669 (-)	8 bp