Rpl17-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl17-ps1
• Name
  ribosomal protein L17, pseudogene 1
• Synonyms
  Gm11589

• Feature Type
  pseudogene
• IDs
  MGI:3652107
  NCBI Gene: 433313
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:61114833-61115384 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 30.63 cM

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652107	pseudogene	Chr1:61114798-61115416 (+)
129S1/SvImJ	ENSMUSG00200018747	pseudogene	Chr1:58614980-58615531 (+)
A/J	ENSMUSG00195030051	pseudogene	Chr1:58154350-58154901 (+)
AKR/J	ENSMUSG00220041905	pseudogene	Chr1:58236222-58236773 (+)
BALB/cJ	ENSMUSG00180014224	pseudogene	Chr1:58416544-58417095 (+)
C3H/HeJ	ENSMUSG00175001116	pseudogene	Chr1:58531666-58532217 (+)
C57BL/6NJ	ENSMUSG00215034580	pseudogene	Chr1:58463594-58464145 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009135	pseudogene	Chr1:55196694-55197249 (+)
CAST/EiJ	ENSTCUG00005014499	pseudogene	Chr1:58298370-58298924 (+)
CBA/J	ENSMUSG00210054079	pseudogene	Chr1:58217372-58217923 (+)
DBA/2J	ENSMUSG00185055428	pseudogene	Chr1:59336415-59336966 (+)
FVB/NJ	ENSMUSG00205026378	pseudogene	Chr1:58169205-58169756 (+)
JF1/MsJ	ENSUMUG00000049626	pseudogene	Chr1:58297113-58297667 (+)
LP/J	ENSMUSG00230029822	pseudogene	Chr1:59336835-59337386 (+)
NOD/ShiLtJ	ENSMUSG00190044606	pseudogene	Chr1:58409547-58410098 (+)
NZO/HlLtJ	ENSMUSG00225001394	pseudogene	Chr1:62558576-62559127 (+)
PWK/PhJ	ENSLUMG00010025775	pseudogene	Chr1:57824893-57825447 (+)
SPRET/EiJ	ENSMSPG00010027138	pseudogene	Chr1:59778178-59778732 (+)
WSB/EiJ	ENSIUOG00005021279	pseudogene	Chr1:57999041-57999592 (+)

Homology

• Gene Tree
  Rpl17-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl17-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082804 (Evidence)
• NCBI Gene
  433313

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082804	Ensembl Gene Model | MGI Sequence Detail	552	C57BL/6J
transcript	ENSMUST00000119156	Ensembl | MGI Sequence Detail	552	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Rpl17-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6970	Chr1:61114796-61114798 (+)	-36 bp