Gm11339 Gene Detail

Summary

• Symbol
  Gm11339
• Name
  predicted gene 11339

• Feature Type
  lncRNA gene
• IDs
  MGI:3652101
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:24117408-24182732 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.02 cM

Strain
Comparison

• SNPs within 2kb
  2214 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652101	lncRNA gene	Chr13:24117408-24182732 (+)
129S1/SvImJ	ENSMUSG00200031244	lncRNA gene	Chr13:21271312-21280679 (+)
A/J	ENSMUSG00195039413	lncRNA gene	Chr13:20420488-20429862 (+)
AKR/J	ENSMUSG00220013075	lncRNA gene	Chr13:20241628-20251004 (+)
BALB/cJ	ENSMUSG00180024455	lncRNA gene	Chr13:20738994-20748360 (+)
C3H/HeJ	ENSMUSG00175032882	lncRNA gene	Chr13:20745200-20754574 (+)
C57BL/6NJ	ENSMUSG00215014310	lncRNA gene	Chr13:20898038-20907404 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002810	antisense lncRNA gene	Chr13:19788694-19799082 (+)
CAST/EiJ	ENSTCUG00005010724	lncRNA gene	Chr13:20919054-20929182 (+)
CBA/J	ENSMUSG00210026977	lncRNA gene	Chr13:20700483-20709859 (+)
DBA/2J	ENSMUSG00185021087	lncRNA gene	Chr13:21522483-21531849 (+)
FVB/NJ	ENSMUSG00205029412	lncRNA gene	Chr13:20540917-20550283 (+)
JF1/MsJ	ENSUMUG00000022697	lncRNA gene	Chr13:21186069-21195573 (+)
LP/J	ENSMUSG00230020488	lncRNA gene	Chr13:30845339-30854840 (+)
NOD/ShiLtJ	ENSMUSG00190037436	lncRNA gene	Chr13:20516613-20526116 (+)
NZO/HlLtJ	ENSMUSG00225045685	lncRNA gene	Chr13:24634904-24644270 (+)
PWK/PhJ	ENSLUMG00010032328	lncRNA gene	Chr13:20078617-20088109 (+)
SPRET/EiJ	ENSMSPG00010020866	lncRNA gene	Chr13:19855870-19865293 (+)
WSB/EiJ	ENSIUOG00005016672	lncRNA gene	Chr13:20042347-20051773 (+)

Homology

• Gene Tree
  Gm11339
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11339
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000087603 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087603	Ensembl Gene Model | MGI Sequence Detail	65325	C57BL/6J
transcript	ENSMUST00000378263	Ensembl | MGI Sequence Detail	1223	Not Applicable

References

• Summaries
  All 13

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for Gm11339:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118884	Chr13:24151264-24151270 (+)	33,859 bp