Gm14439 Pseudogene Detail

Summary

• Symbol
  Gm14439
• Name
  predicted gene 14439

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3652090
  NCBI Gene: 108168824
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:174904229-174904669 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 98.24 cM

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652090	pseudogene	Chr2:174903752-174904719 (+)
129S1/SvImJ	ENSMUSG00200041686	pseudogene	Chr2:171940860-171941300 (+)
A/J	ENSMUSG00195001154	pseudogene	Chr2:172172335-172172775 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175046277	pseudogene	Chr2:172278348-172278532 (+)
C57BL/6NJ	ENSMUSG00215034701	pseudogene	Chr2:171803685-171804125 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185026265	pseudogene	Chr2:172000233-172000673 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000048135	pseudogene	Chr2:171762717-171763157 (+)
LP/J	ENSMUSG00230027846	pseudogene	Chr2:173579870-173580310 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004217	pseudogene	Chr2:181572020-181572460 (+)
PWK/PhJ	ENSLUMG00010040291	pseudogene	Chr2:171534093-171534560 (+)
SPRET/EiJ	ENSMSPG00010004303	pseudogene	Chr2:174405287-174405465 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm14439
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm14439
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2

• Ensembl
  ENSMUSG00000084050 (Evidence)
• NCBI Gene
  108168824

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084050	Ensembl Gene Model | MGI Sequence Detail	441	C57BL/6J
transcript	ENSMUST00000122320	Ensembl | MGI Sequence Detail	441	Not Applicable
polypeptide	XP_036018660	RefSeq | MGI Sequence Detail	148	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:291191 Wolf G, et al., KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage. Elife. 2020 Jun 1;9:e56337