Rpl15-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl15-ps1
• Name
  ribosomal protein L15, pseudogene 1
• Synonyms
  Gm12048

• Feature Type
  pseudogene
• IDs
  MGI:3652079
  NCBI Gene: 382494
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:21903140-21903703 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.09 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652079	pseudogene	Chr11:21903106-21903754 (+)
129S1/SvImJ	ENSMUSG00200022182	pseudogene	Chr11:18914298-18914861 (+)
A/J	ENSMUSG00195005614	pseudogene	Chr11:18766515-18767078 (+)
AKR/J	ENSMUSG00220003783	pseudogene	Chr11:18863048-18863611 (+)
BALB/cJ	ENSMUSG00180004286	pseudogene	Chr11:18772348-18772911 (+)
C3H/HeJ	ENSMUSG00175008400	pseudogene	Chr11:18786616-18787179 (+)
C57BL/6NJ	ENSMUSG00215003531	pseudogene	Chr11:18845700-18846263 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009518	pseudogene	Chr11:17820755-17821357 (+)
CAST/EiJ	ENSTCUG00005007628	pseudogene	Chr11:18734350-18734913 (+)
CBA/J	ENSMUSG00210009672	pseudogene	Chr11:18775152-18775715 (+)
DBA/2J	ENSMUSG00185012310	pseudogene	Chr11:18878100-18878663 (+)
FVB/NJ	ENSMUSG00205005436	pseudogene	Chr11:18835869-18836432 (+)
JF1/MsJ	ENSUMUG00000006314	pseudogene	Chr11:19069010-19069572 (+)
LP/J	ENSMUSG00230004281	pseudogene	Chr11:19922461-19923024 (+)
NOD/ShiLtJ	ENSMUSG00190008962	pseudogene	Chr11:18923014-18923577 (+)
NZO/HlLtJ	ENSMUSG00225022054	pseudogene	Chr11:21951062-21951625 (+)
PWK/PhJ	ENSLUMG00010012215	pseudogene	Chr11:18724747-18725309 (+)
SPRET/EiJ	ENSMSPG00010018888	pseudogene	Chr11:19020966-19021529 (+)
WSB/EiJ	ENSIUOG00005010227	pseudogene	Chr11:18819342-18819905 (+)

Homology

• Gene Tree
  Rpl15-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl15-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082874 (Evidence)
• NCBI Gene
  382494

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082874	Ensembl Gene Model | MGI Sequence Detail	564	C57BL/6J
transcript	ENSMUST00000120694	Ensembl | MGI Sequence Detail	564	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl15-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100577	Chr11:21903103-21903112 (+)	-32 bp