Krtap9-20 MGI Mouse Gene Detail - MGI:3652067 - keratin associated protein 9-20

Symbol

Krtap9-20
Name

keratin associated protein 9-20
Synonyms

Gm11559

Feature Type

protein coding gene
IDs

MGI:3652067
NCBI Gene: 100415785
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr11:99755302-99756397 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 63.21 cM

SNPs within 2kb

147 from dbSNP Build 142
Strain Annotations

16

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652067	protein coding gene	Chr11:99755302-99756397 (+)
129S1/SvImJ	ENSMUSG00200051256	protein coding gene	Chr11:97018943-97020038 (+)
A/J	ENSMUSG00195047962	protein coding gene	Chr11:96707430-96708506 (+)
AKR/J	ENSMUSG00220049246	protein coding gene	Chr11:96967968-96969059 (+)
BALB/cJ	ENSMUSG00180044946	protein coding gene	Chr11:97089810-97090890 (+)
C3H/HeJ	ENSMUSG00175050655	protein coding gene	Chr11:96992490-96993585 (+)
C57BL/6NJ	ENSMUSG00215053759	protein coding gene	Chr11:96574220-96575315 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017145	protein coding gene	Chr11:95738313-95739465 (+)
CAST/EiJ	ENSTCUG00005048069	protein coding gene	Chr11:96496417-96497497 (+)
CBA/J	ENSMUSG00210051709	protein coding gene	Chr11:96723157-96724237 (+)
DBA/2J	ENSMUSG00185051330	protein coding gene	Chr11:97042363-97043458 (+)
FVB/NJ	ENSMUSG00205028563	protein coding gene	Chr11:96902699-96903794 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230050778	protein coding gene	Chr11:98095158-98096253 (+)
NOD/ShiLtJ	ENSMUSG00190039461	protein coding gene	Chr11:97077235-97078330 (+)
NZO/HlLtJ	ENSMUSG00225050151	protein coding gene	Chr11:100140028-100141119 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047025	protein coding gene	Chr11:96855097-96856192 (+)

Human Ortholog

KRTAP9-4, keratin associated protein 9-4

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

KRTAP9-4, keratin associated protein 9-4
Synonyms

KAP9.4, KRTAP9.4
Links

HGNC:18902

NCBI Gene ID: 85280

UniProt: Q9BYQ2
Chr Location

17q21.2; chr17:41249687-41250653 (+) GRCh38

Human Ortholog

KRTAP9-6, keratin associated protein 9-6
Synonyms

KAP9.6, KRTAP9.6, KRTAP9L2
Links

HGNC:18914

NCBI Gene ID: 100507608

UniProt: A8MVA2
Chr Location

chr17:41265378-41265860 (+) GRCh38

Human Ortholog

KRTAP9-9, keratin associated protein 9-9
Synonyms

KAP9.5, KAP9.9, KRTAP9-5, KRTAP9.9
Links

HGNC:16773

NCBI Gene ID: 81870

UniProt: Q9BYP9
Chr Location

17q21.2; chr17:41255384-41256364 (+) GRCh38

MGI Vertebrate Homology

Krtap9-20 stringent orthology
3 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: KRTAP9-4, KRTAP9-6, KRTAP9-9
Gene Tree

Krtap9-20

less

Phenotype Summary

7 phenotype references

All Mutations and Alleles

2
Targeted

2
Genomic Mutations

2 involving Krtap9-20
Find Mice (IMSR)

7 strains or lines available

less

All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

less

All Sequences

25
RefSeq

2
UniProt

2
CCDS

CCDS48923.1

Ensembl

ENSMUSG00000090225 (Evidence)
NCBI Gene

100415785

			Length	Strain/Species	Flank
genomic	100415785	NCBI Gene Model \| MGI Sequence Detail	1096	C57BL/6J	± kb
transcript	NM_001177484	RefSeq \| MGI Sequence Detail	1096	C57BL/6
polypeptide	NP_001170955	RefSeq \| MGI Sequence Detail	191	C57BL/6

less

UniProt

2 Sequences
InterPro Domains

IPR002494 Keratin-associated protein

less

All nucleic 3

cDNA 3

Microarray probesets 2

less

MGI:7580911

Summaries

All 23

Gene Ontology 2

Phenotypes 7
Earliest

J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
Latest

J:357457 Kumar V, et al., Keratin-dependent thymic stromal lymphopoietin expression suggests a link between skin blistering and atopic disease. J Allergy Clin Immunol. 2016;138(5):1461-1464

TSS for Krtap9-20:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104887	Chr11:99755920-99755935 (+)	626 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29