Gm13563 Gene Detail

Summary

• Symbol
  Gm13563
• Name
  predicted gene 13563

• Feature Type
  lncRNA gene
• IDs
  MGI:3652052
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:26270697-26279030 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.88 cM

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652052	lncRNA gene	Chr2:26270697-26279030 (+)
129S1/SvImJ	ENSMUSG00200053148	lncRNA gene	Chr2:23250734-23258226 (+)
A/J	ENSMUSG00195049607	lncRNA gene	Chr2:23339564-23347056 (+)
AKR/J	ENSMUSG00220053824	lncRNA gene	Chr2:23457348-23464840 (+)
BALB/cJ	ENSMUSG00180054544	lncRNA gene	Chr2:23352209-23359701 (+)
C3H/HeJ	ENSMUSG00175053794	lncRNA gene	Chr2:23321617-23329109 (+)
C57BL/6NJ	ENSMUSG00215049963	lncRNA gene	Chr2:23380349-23387841 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003143	antisense lncRNA gene	Chr2:22277324-22285204 (+)
CAST/EiJ	ENSTCUG00005053437	lncRNA gene	Chr2:23089084-23096572 (+)
CBA/J	ENSMUSG00210018002	lncRNA gene	Chr2:23355281-23362773 (+)
DBA/2J	ENSMUSG00185053747	lncRNA gene	Chr2:23253635-23261127 (+)
FVB/NJ	ENSMUSG00205050535	lncRNA gene	Chr2:23109125-23116617 (+)
JF1/MsJ	ENSUMUG00000056484	lncRNA gene	Chr2:23160563-23167997 (+)
LP/J	ENSMUSG00230045735	lncRNA gene	Chr2:25186700-25194192 (+)
NOD/ShiLtJ	ENSMUSG00190052942	lncRNA gene	Chr2:23345643-23353135 (+)
NZO/HlLtJ	ENSMUSG00225011169	lncRNA gene	Chr2:32924325-32931817 (+)
PWK/PhJ	ENSLUMG00010053047	lncRNA gene	Chr2:23252574-23260007 (+)
SPRET/EiJ	ENSMSPG00010047916	lncRNA gene	Chr2:23945378-23952831 (+)
WSB/EiJ	ENSIUOG00005052827	lncRNA gene	Chr2:23210764-23218256 (+)

Homology

• Gene Tree
  Gm13563
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085767 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085767	Ensembl Gene Model | MGI Sequence Detail	8334	C57BL/6J
transcript	ENSMUST00000150375	Ensembl | MGI Sequence Detail	851	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13563:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16791	Chr2:26270708-26270747 (+)	31 bp