Gm12966 Pseudogene Detail

Summary

• Symbol
  Gm12966
• Name
  predicted gene 12966

• Feature Type
  pseudogene
• IDs
  MGI:3652043
  NCBI Gene: 622469
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:129792886-129793695 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 63.42 cM

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652043	pseudogene	Chr4:129792742-129794228 (+)
129S1/SvImJ	ENSMUSG00200021423	pseudogene	Chr4:123234110-123234913 (+)
A/J	ENSMUSG00195045927	pseudogene	Chr4:124567377-124568180 (+)
AKR/J	ENSMUSG00220048575	pseudogene	Chr4:123559142-123559945 (+)
BALB/cJ	ENSMUSG00180050062	pseudogene	Chr4:122201071-122201874 (+)
C3H/HeJ	ENSMUSG00175048495	pseudogene	Chr4:123213641-123214444 (+)
C57BL/6NJ	ENSMUSG00215052715	pseudogene	Chr4:124717235-124718044 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009787	pseudogene	Chr12:75382900-75386270 (+)
CAST/EiJ	ENSTCUG00005048038	pseudogene	Chr4:124096734-124097536 (+)
CBA/J	ENSMUSG00210053927	pseudogene	Chr4:122842649-122843452 (+)
DBA/2J	ENSMUSG00185052688	pseudogene	Chr4:124375006-124375809 (+)
FVB/NJ	ENSMUSG00205048878	pseudogene	Chr4:122602187-122602990 (+)
JF1/MsJ	ENSUMUG00000046836	pseudogene	Chr4:125027673-125028482 (+)
LP/J	ENSMUSG00230038819	pseudogene	Chr4:128171525-128172328 (+)
NOD/ShiLtJ	ENSMUSG00190050186	pseudogene	Chr4:122607508-122608311 (+)
NZO/HlLtJ	ENSMUSG00225022567	pseudogene	Chr10:96814069-96814878 (-)
NZO/HlLtJ	ENSMUSG00225026717	pseudogene	Chr4:134085903-134086706 (+)
PWK/PhJ	ENSLUMG00010049812	pseudogene	Chr4:122057989-122058798 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005046421	pseudogene	Chr4:122469356-122470159 (+)

Homology

• Gene Tree
  Gm12966
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12966
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000070729 (Evidence)
• NCBI Gene
  622469

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070729	Ensembl Gene Model | MGI Sequence Detail	810	C57BL/6J
transcript	ENSMUST00000118024	Ensembl | MGI Sequence Detail	810	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12966:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39205	Chr4:129792835-129792841 (+)	-48 bp