Gm12121 MGI Mouse Gene Detail - MGI:3651988

Sequence Map

Chr11:34086963-34093753 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651988	lncRNA gene	Chr11:34086945-34098891 (+)
129S1/SvImJ	ENSMUSG00200007313	lncRNA gene	Chr11:31131072-31132666 (+)
A/J	ENSMUSG00195007387	lncRNA gene	Chr11:31039504-31041098 (+)
AKR/J	ENSMUSG00220003435	lncRNA gene	Chr11:31236281-31237894 (+)
BALB/cJ	ENSMUSG00180001799	lncRNA gene	Chr11:31072433-31074050 (+)
C3H/HeJ	ENSMUSG00175003830	lncRNA gene	Chr11:31045543-31047137 (+)
C57BL/6NJ	ENSMUSG00215010397	lncRNA gene	Chr11:31002862-31004456 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004718	lincRNA gene	Chr11:29733926-29735499 (+)
CAST/EiJ	ENSTCUG00005030028	lncRNA gene	Chr11:30928457-30930114 (+)
CBA/J	ENSMUSG00210006863	lncRNA gene	Chr11:30937363-30938976 (+)
DBA/2J	ENSMUSG00185010516	lncRNA gene	Chr11:31124671-31126265 (+)
FVB/NJ	ENSMUSG00205012263	lncRNA gene	Chr11:31126530-31128151 (+)
JF1/MsJ	ENSUMUG00000005369	lncRNA gene	Chr11:31380726-31382345 (+)
LP/J	ENSMUSG00230003909	lncRNA gene	Chr11:32290142-32291759 (+)
NOD/ShiLtJ	ENSMUSG00190007480	lncRNA gene	Chr11:31210370-31211989 (+)
NZO/HlLtJ	ENSMUSG00225030765	lncRNA gene	Chr11:34180886-34182499 (+)
PWK/PhJ	ENSLUMG00010017732	lncRNA gene	Chr11:31041070-31042683 (+)
SPRET/EiJ	ENSMSPG00010002278	lncRNA gene	Chr11:31424142-31425786 (+)
WSB/EiJ	ENSIUOG00005002147	lncRNA gene	Chr11:31121206-31122800 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000086243	Ensembl Gene Model \| MGI Sequence Detail	6791	C57BL/6J	± kb
	transcript	ENSMUST00000289015	Ensembl \| MGI Sequence Detail	1416	Not Applicable

Summaries

All 10

Phenotypes 3
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12121:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100921	Chr11:34086959-34086965 (+)	-1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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