Gm13075 Gene Detail

Summary

• Symbol
  Gm13075
• Name
  predicted gene 13075

• Feature Type
  lncRNA gene
• IDs
  MGI:3651958
  NCBI Gene: 100503826
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:141125962-141138502 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 74.00 cM

Strain
Comparison

• SNPs within 2kb
  530 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651958	lncRNA gene	Chr4:141125962-141138502 (+)
129S1/SvImJ	ENSMUSG00200047612	lncRNA gene	Chr4:134550453-134562709 (+)
A/J	ENSMUSG00195036985	lncRNA gene	Chr4:135892088-135904456 (+)
AKR/J	ENSMUSG00220049221	lncRNA gene	Chr4:134892882-134905247 (+)
BALB/cJ	ENSMUSG00180046743	lncRNA gene	Chr4:133533166-133545523 (+)
C3H/HeJ	ENSMUSG00175043880	lncRNA gene	Chr4:134559735-134572096 (+)
C57BL/6NJ	ENSMUSG00215050983	lncRNA gene	Chr4:136077628-136089996 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003586	antisense lncRNA gene	Chr4:131079716-131094660 (+)
CAST/EiJ	ENSTCUG00005013963	lncRNA gene	Chr4:135517166-135529480 (+)
CBA/J	ENSMUSG00210030063	lncRNA gene	Chr4:134183643-134196006 (+)
DBA/2J	ENSMUSG00185051612	lncRNA gene	Chr4:135695763-135707777 (+)
FVB/NJ	ENSMUSG00205043312	lncRNA gene	Chr4:133946953-133958993 (+)
JF1/MsJ	ENSUMUG00000047212	lncRNA gene	Chr4:136380857-136393232 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190038288	lncRNA gene	Chr4:133942498-133954531 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010047885	lncRNA gene	Chr4:133381203-133393218 (+)
SPRET/EiJ	ENSMSPG00010037718	lncRNA gene	Chr4:135424972-135436861 (+)
WSB/EiJ	ENSIUOG00005048704	lncRNA gene	Chr4:133828757-133840776 (+)

Homology

• Gene Tree
  Gm13075
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm13075
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000086061 (Evidence)
• NCBI Gene
  100503826

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086061	Ensembl Gene Model | MGI Sequence Detail	12541	C57BL/6J
transcript	ENSMUST00000149247	Ensembl | MGI Sequence Detail	1666	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm13075:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40051	Chr4:141126137-141126153 (+)	183 bp