Gm12852 Pseudogene Detail

Summary

• Symbol
  Gm12852
• Name
  predicted gene 12852

• Feature Type
  pseudogene
• IDs
  MGI:3651942
  NCBI Gene: 100417329
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:98991297-98992015 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.60 cM

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651942	pseudogene	Chr4:98991187-98992070 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012780	pseudogene	Chr4:99322587-99323305 (-)
A/J	MGP_AJ_G0012766	pseudogene	Chr4:95866867-95867585 (-)
AKR/J	MGP_AKRJ_G0012736	pseudogene	Chr4:98194482-98195200 (-)
BALB/cJ	MGP_BALBcJ_G0012747	pseudogene	Chr4:96118398-96119116 (-)
C3H/HeJ	MGP_C3HHeJ_G0012604	pseudogene	Chr4:98991461-98992179 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013078	pseudogene	Chr4:103088068-103088786 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011360	pseudogene	Chr4:91253894-91254645 (-)
CAST/EiJ	MGP_CASTEiJ_G0012358	pseudogene	Chr4:96777814-96780567 (-)
CBA/J	MGP_CBAJ_G0012580	pseudogene	Chr4:106244311-106245029 (-)
DBA/2J	MGP_DBA2J_G0012642	pseudogene	Chr4:95599344-95600062 (-)
FVB/NJ	MGP_FVBNJ_G0012646	pseudogene	Chr4:94442607-94443325 (-)
LP/J	MGP_LPJ_G0012717	pseudogene	Chr4:99637277-99637995 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012655	pseudogene	Chr4:111983522-111984240 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013086	pseudogene	Chr4:98434431-98435149 (-)
PWK/PhJ	MGP_PWKPhJ_G0012181	pseudogene	Chr4:93742017-93742734 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011990	pseudogene	Chr4:95885281-95886001 (-)
WSB/EiJ	MGP_WSBEiJ_G0012385	pseudogene	Chr4:98574193-98574911 (-)

Homology

• Gene Tree
  Gm12852
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12852
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081733 (Evidence)
• NCBI Gene
  100417329

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081733	Ensembl Gene Model | MGI Sequence Detail	719	C57BL/6J
transcript	ENSMUST00000119478	Ensembl | MGI Sequence Detail	719	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12852:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42520	Chr4:98992033-98992070 (-)	-37 bp