Gm12265 Gene Detail

Summary

• Symbol
  Gm12265
• Name
  predicted gene 12265

• Feature Type
  lncRNA gene
• IDs
  MGI:3651913
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:60131587-60133733 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.81 cM

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651913	lncRNA gene	Chr11:60131587-60133733 (+)
129S1/SvImJ	ENSMUSG00200037448	lncRNA gene	Chr11:57139857-57141982 (+)
A/J	ENSMUSG00195042185	lncRNA gene	Chr11:57078046-57080170 (+)
AKR/J	ENSMUSG00220050901	lncRNA gene	Chr11:57248006-57250132 (+)
BALB/cJ	ENSMUSG00180050319	lncRNA gene	Chr11:57155344-57157470 (+)
C3H/HeJ	ENSMUSG00175048004	lncRNA gene	Chr11:57113146-57115270 (+)
C57BL/6NJ	ENSMUSG00215039906	lncRNA gene	Chr11:56922642-56924768 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002623	antisense lncRNA gene	Chr11:55069427-55070533 (+)
CAST/EiJ	ENSTCUG00005047756	lncRNA gene	Chr11:56652844-56654954 (+)
CBA/J	ENSMUSG00210040980	lncRNA gene	Chr11:56964383-56966507 (+)
DBA/2J	ENSMUSG00185044859	lncRNA gene	Chr11:57138906-57141032 (+)
FVB/NJ	ENSMUSG00205051564	lncRNA gene	Chr11:57030831-57032956 (+)
JF1/MsJ	ENSUMUG00000051897	lncRNA gene	Chr11:57496502-57498626 (+)
LP/J	ENSMUSG00230050458	lncRNA gene	Chr11:58347839-58349964 (+)
NOD/ShiLtJ	ENSMUSG00190052195	lncRNA gene	Chr11:57211696-57213822 (+)
NZO/HlLtJ	ENSMUSG00225033260	lncRNA gene	Chr11:60368578-60370704 (+)
PWK/PhJ	ENSLUMG00010036662	lncRNA gene	Chr11:56958166-56960290 (+)
SPRET/EiJ	ENSMSPG00010041272	lncRNA gene	Chr11:57743326-57745462 (+)
WSB/EiJ	ENSIUOG00005038173	lncRNA gene	Chr11:57015889-57018015 (+)

Homology

• Gene Tree
  Gm12265
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm12265
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085132 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085132	Ensembl Gene Model | MGI Sequence Detail	2147	C57BL/6J
transcript	ENSMUST00000139025	Ensembl | MGI Sequence Detail	1494	Not Applicable

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Diseases 3

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Gm12265:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101881	Chr11:60131553-60131565 (+)	-28 bp