Gm12265 Gene Detail

Summary

• Symbol
  Gm12265
• Name
  predicted gene 12265

• Feature Type
  lncRNA gene
• IDs
  MGI:3651913
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:60131590-60133716 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.81 cM

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651913	lncRNA gene	Chr11:60131590-60133716 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002976	antisense lncRNA gene	Chr11:60110953-60112073 (+)
A/J	MGP_AJ_G0002953	antisense lncRNA gene	Chr11:57829372-57830492 (+)
AKR/J	MGP_AKRJ_G0002934	antisense lncRNA gene	Chr11:59761427-59762547 (+)
BALB/cJ	MGP_BALBcJ_G0002940	antisense lncRNA gene	Chr11:58172273-58173393 (+)
C3H/HeJ	MGP_C3HHeJ_G0002896	antisense lncRNA gene	Chr11:59633095-59634215 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003082	antisense lncRNA gene	Chr11:62008774-62009894 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002623	antisense lncRNA gene	Chr11:55069427-55070533 (+)
CAST/EiJ	MGP_CASTEiJ_G0002867	antisense lncRNA gene	Chr11:59773348-59774452 (+)
CBA/J	MGP_CBAJ_G0002893	antisense lncRNA gene	Chr11:64740066-64741186 (+)
DBA/2J	MGP_DBA2J_G0002900	antisense lncRNA gene	Chr11:57482210-57483330 (+)
FVB/NJ	MGP_FVBNJ_G0002918	antisense lncRNA gene	Chr11:57151191-57152311 (+)
LP/J	MGP_LPJ_G0002975	antisense lncRNA gene	Chr11:60714121-60715241 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002906	antisense lncRNA gene	Chr11:65798992-65800112 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003086	antisense lncRNA gene	Chr11:59791622-59792742 (+)
PWK/PhJ	MGP_PWKPhJ_G0002825	antisense lncRNA gene	Chr11:58088045-58089165 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002772	antisense lncRNA gene	Chr11:59588894-59590020 (+)
WSB/EiJ	MGP_WSBEiJ_G0002896	antisense lncRNA gene	Chr11:59467212-59468332 (+)

Homology

• Gene Tree
  Gm12265
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm12265
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085132 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085132	Ensembl Gene Model | MGI Sequence Detail	2127	C57BL/6J
transcript	ENSMUST00000139025	Ensembl | MGI Sequence Detail	1474	Not Applicable

References

• Summaries
  All 17

  Diseases 3

  Phenotypes 13
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:185284 Lacaria M, et al., Enriched rearing improves behavioral responses of an animal model for CNV-based autistic-like traits. Hum Mol Genet. 2012 Jul 15;21(14):3083-96

TSS for Gm12265:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101881	Chr11:60131553-60131565 (+)	-31 bp