Gm12880 Pseudogene Detail

Summary

• Symbol
  Gm12880
• Name
  predicted gene 12880

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3651893
  NCBI Gene: 100504652
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:121334007-121336647 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.89 cM

Strain
Comparison

• SNPs within 2kb
  345 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651893	pseudogene	Chr4:121334007-121439986 (-)
129S1/SvImJ	ENSMUSG00200015189	pseudogene	Chr4:115231312-115233957 (-)
A/J	ENSMUSG00195035094	pseudogene	Chr4:116454133-116456777 (-)
AKR/J	ENSMUSG00220022694	pseudogene	Chr4:115852410-115855053 (-)
BALB/cJ	ENSMUSG00180047471	pseudogene	Chr4:114519162-114521807 (-)
C3H/HeJ	ENSMUSG00175026708	pseudogene	Chr4:115532248-115534893 (-)
C57BL/6NJ	ENSMUSG00215039878	pseudogene	Chr4:116674001-116676641 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046333	pseudogene	Chr4:115265264-115267649 (-)
CBA/J	ENSMUSG00210052800	pseudogene	Chr4:115138634-115141279 (-)
DBA/2J	ENSMUSG00185047858	pseudogene	Chr4:116693746-116696391 (-)
FVB/NJ	ENSMUSG00205027738	pseudogene	Chr4:114613673-114616320 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230046808	pseudogene	Chr4:120049532-120052177 (-)
NOD/ShiLtJ	ENSMUSG00190047460	pseudogene	Chr4:114532090-114534735 (-)
NZO/HlLtJ	ENSMUSG00225017259	pseudogene	Chr4:125604808-125607448 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047754	pseudogene	Chr4:114841886-114844529 (-)

Homology

• Gene Tree
  Gm12880
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12880
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2

• Ensembl
  ENSMUSG00000082821 (Evidence)
• NCBI Gene
  100504652

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082821	Ensembl Gene Model | MGI Sequence Detail	2641	C57BL/6J
transcript	ENSMUST00000120652	Ensembl | MGI Sequence Detail	494	Not Applicable
polypeptide	XP_003084636	RefSeq | MGI Sequence Detail	116	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;