Gm13935 Pseudogene Detail

Summary

• Symbol
  Gm13935
• Name
  predicted gene 13935

• Feature Type
  pseudogene
• IDs
  MGI:3651886
  NCBI Gene: 668799
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:110248515-110249964 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 56.71 cM

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651886	pseudogene	Chr2:110248467-110249985 (-)
129S1/SvImJ	ENSMUSG00200008549	pseudogene	Chr2:107140494-107141943 (-)
A/J	ENSMUSG00195031460	pseudogene	Chr2:107214771-107216220 (-)
AKR/J	ENSMUSG00220005404	pseudogene	Chr2:107046456-107047907 (-)
BALB/cJ	ENSMUSG00180034589	pseudogene	Chr2:107009967-107011416 (-)
C3H/HeJ	ENSMUSG00175033201	pseudogene	Chr2:107411741-107413188 (-)
C57BL/6NJ	ENSMUSG00215028486	pseudogene	Chr2:107142290-107143741 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006073	pseudogene	Chr2:106411583-106413032 (-)
CBA/J	ENSMUSG00210041582	pseudogene	Chr2:107284119-107285568 (-)
DBA/2J	ENSMUSG00185040051	pseudogene	Chr2:107006359-107007808 (-)
FVB/NJ	ENSMUSG00205021355	pseudogene	Chr2:106313126-106314575 (-)
JF1/MsJ	ENSUMUG00000004336	pseudogene	Chr2:106813402-106814849 (-)
LP/J	ENSMUSG00230006234	pseudogene	Chr2:108802819-108804268 (-)
NOD/ShiLtJ	ENSMUSG00190016359	pseudogene	Chr2:107227845-107229294 (-)
NZO/HlLtJ	ENSMUSG00225013211	pseudogene	Chr2:116702742-116704191 (-)
PWK/PhJ	ENSLUMG00010003648	pseudogene	Chr2:106799466-106800916 (-)
SPRET/EiJ	ENSMSPG00010038052	pseudogene	Chr2:109006797-109008233 (-)
WSB/EiJ	ENSIUOG00005033177	pseudogene	Chr2:106893094-106894544 (-)

Homology

• Gene Tree
  Gm13935
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm13935
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083320 (Evidence)
• NCBI Gene
  668799

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083320	Ensembl Gene Model | MGI Sequence Detail	1450	C57BL/6J
transcript	ENSMUST00000121859	Ensembl | MGI Sequence Detail	798	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Gm13935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr592	Chr2:110249978-110249988 (-)	-19 bp