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Prdm16os Gene Detail
Summary
  • Symbol
    Prdm16os
  • Name
    Prdm16 opposite strand transcript
  • Synonyms
    lnc-dPrdm16
Location &
Maps
more
  • Sequence Map
    Chr4:154722037-154729175 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 84.69 cM
Strain
Comparison
more
  • SNPs within 2kb
    3 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651882
 antisense lncRNA gene Chr4:154722033-154729181 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004017
 antisense lncRNA gene Chr4:158922456-158931798 (+)
A/J MGP_AJ_G0003998
 antisense lncRNA gene Chr4:152248423-152255561 (+)
AKR/J MGP_AKRJ_G0003975
 antisense lncRNA gene Chr4:156403149-156410295 (+)
BALB/cJ MGP_BALBcJ_G0003984
 antisense lncRNA gene Chr4:152718420-152725568 (+)
C3H/HeJ MGP_C3HHeJ_G0003931
 antisense lncRNA gene Chr4:156942007-156950123 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004133
 antisense lncRNA gene Chr4:164591143-164598249 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003614
 antisense lncRNA gene Chr4:144548516-144555756 (+)
CAST/EiJ MGP_CASTEiJ_G0003894
 antisense lncRNA gene Chr4:154356798-154364004 (+)
CBA/J MGP_CBAJ_G0003924
 antisense lncRNA gene Chr4:169539587-169549403 (+)
DBA/2J MGP_DBA2J_G0003940
 antisense lncRNA gene Chr4:152276213-152283383 (+)
FVB/NJ MGP_FVBNJ_G0003959
 antisense lncRNA gene Chr4:151488422-151495865 (+)
LP/J MGP_LPJ_G0004020
 antisense lncRNA gene Chr4:158840557-158847701 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003947
 antisense lncRNA gene Chr4:172430542-172437694 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004127
 antisense lncRNA gene Chr4:156984704-156991970 (+)
PWK/PhJ MGP_PWKPhJ_G0003848
 antisense lncRNA gene Chr4:148383443-148390662 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003793
 antisense lncRNA gene Chr4:151272503-151279598 (+)
WSB/EiJ MGP_WSBEiJ_G0003930
 antisense lncRNA gene Chr4:157148908-157156044 (+)



Homology
more
  • Human Ortholog
    PRDM16-DT, PRDM16 divergent transcript
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRDM16-DT, PRDM16 divergent transcript
  • Synonyms
    LINC00982, lnc-dPrdm16
  • Links
    NCBI Gene ID: 440556

  • Chr Location
    1p36.32; chr1:3059611-3069091 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042178 NCBI Gene Model | MGI Sequence Detail 7139 C57BL/6J ±  kb
transcript NR_168731 RefSeq | MGI Sequence Detail 3532 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
References
more
  • Summaries
    All 12
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:269596 Ding C, et al., De novo reconstruction of human adipose transcriptome reveals conserved lncRNAs as regulators of brown adipogenesis. Nat Commun. 2018 Apr 6;9(1):1329
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory