Gm12380 Pseudogene Detail

Summary

• Symbol
  Gm12380
• Name
  predicted gene 12380

• Feature Type
  pseudogene
• IDs
  MGI:3651854
  NCBI Gene: 100039448
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:38263918-38264461 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 19.90 cM

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651854	pseudogene	Chr4:38263918-38264461 (+)
129S1/SvImJ	ENSMUSG00200005865	pseudogene	Chr4:35060121-35060664 (+)
A/J	ENSMUSG00195003561	pseudogene	Chr4:35452424-35452967 (+)
AKR/J	ENSMUSG00220038485	pseudogene	Chr4:35266681-35267224 (+)
BALB/cJ	ENSMUSG00180027899	pseudogene	Chr4:35032319-35032862 (+)
C3H/HeJ	ENSMUSG00175023602	pseudogene	Chr4:35428590-35429133 (+)
C57BL/6NJ	ENSMUSG00215033785	pseudogene	Chr4:35089254-35089797 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005051	pseudogene	Chr4:35001387-35001930 (+)
CBA/J	ENSMUSG00210008173	pseudogene	Chr4:35147407-35147950 (+)
DBA/2J	ENSMUSG00185006929	pseudogene	Chr4:35221037-35221580 (+)
FVB/NJ	ENSMUSG00205028812	pseudogene	Chr4:34802462-34803005 (+)
JF1/MsJ	ENSUMUG00000031579	pseudogene	Chr4:35198202-35198745 (+)
LP/J	ENSMUSG00230001063	pseudogene	Chr4:38565750-38566293 (+)
NOD/ShiLtJ	ENSMUSG00190006177	pseudogene	Chr4:33656739-33657282 (-)
NZO/HlLtJ	ENSMUSG00225007150	pseudogene	Chr4:42477989-42478532 (+)
PWK/PhJ	ENSLUMG00010006946	pseudogene	Chr4:34684106-34684649 (+)
SPRET/EiJ	ENSMSPG00010025292	pseudogene	Chr4:35607499-35608042 (+)
WSB/EiJ	ENSIUOG00005050172	pseudogene	Chr4:35012993-35013536 (+)

Homology

• Gene Tree
  Gm12380
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12380
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084148 (Evidence)
• NCBI Gene
  100039448

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084148	Ensembl Gene Model | MGI Sequence Detail	544	C57BL/6J
transcript	ENSMUST00000119012	Ensembl | MGI Sequence Detail	544	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12380:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36787	Chr4:38263871-38263876 (+)	-44 bp