Gm11504 Pseudogene Detail

Summary

• Symbol
  Gm11504
• Name
  predicted gene 11504

• Feature Type
  pseudogene
• IDs
  MGI:3651777
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:87822813-87822985 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.31 cM

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651777	pseudogene	Chr11:87822813-87822985 (+)
129S1/SvImJ	ENSMUSG00200020655	pseudogene	Chr11:84958811-84958983 (+)
A/J	ENSMUSG00195009812	pseudogene	Chr11:84813693-84813865 (+)
AKR/J	ENSMUSG00220012453	pseudogene	Chr11:85013277-85013449 (+)
BALB/cJ	ENSMUSG00180011702	pseudogene	Chr11:85020466-85020638 (+)
C3H/HeJ	ENSMUSG00175034723	pseudogene	Chr11:84960264-84960436 (+)
C57BL/6NJ	ENSMUSG00215030041	pseudogene	Chr11:84598750-84598922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009674	pseudogene	Chr11:83151931-83152103 (+)
CAST/EiJ	ENSTCUG00005017013	pseudogene	Chr11:84514926-84515098 (+)
CBA/J	ENSMUSG00210040893	pseudogene	Chr11:84777831-84778003 (+)
DBA/2J	ENSMUSG00185020425	pseudogene	Chr11:85094562-85094734 (+)
FVB/NJ	ENSMUSG00205022193	pseudogene	Chr11:84973446-84973618 (+)
JF1/MsJ	ENSUMUG00000030680	pseudogene	Chr11:85420179-85420351 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020479	pseudogene	Chr11:85125816-85125988 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035590	pseudogene	Chr11:84971474-84971646 (+)
SPRET/EiJ	ENSMSPG00010029278	pseudogene	Chr11:85370109-85370281 (+)
WSB/EiJ	ENSIUOG00005008110	pseudogene	Chr11:84937150-84937322 (+)

Homology

• Gene Tree
  Gm11504
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm11504
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000083135 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083135	Ensembl Gene Model | MGI Sequence Detail	173	C57BL/6J
transcript	ENSMUST00000120211	Ensembl | MGI Sequence Detail	173	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307

TSS for Gm11504:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3636	Chr11:87822772-87822776 (+)	-39 bp