Gm12466 Pseudogene Detail

Summary

• Symbol
  Gm12466
• Name
  predicted gene 12466

• Feature Type
  pseudogene
• IDs
  MGI:3651763
  NCBI Gene: 100041026
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:52240903-52241522 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.20 cM

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651763	pseudogene	Chr4:52240866-52241572 (+)
129S1/SvImJ	ENSMUSG00200003277	pseudogene	Chr4:48307566-48308185 (+)
A/J	ENSMUSG00195006508	pseudogene	Chr4:48709808-48710427 (+)
AKR/J	ENSMUSG00220003120	pseudogene	Chr4:48475882-48476502 (+)
BALB/cJ	ENSMUSG00180030730	pseudogene	Chr4:48297164-48297783 (+)
C3H/HeJ	ENSMUSG00175021531	pseudogene	Chr4:48448317-48448936 (+)
C57BL/6NJ	ENSMUSG00215027186	pseudogene	Chr4:48293432-48294051 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011257	pseudogene	Chr4:45887144-45887757 (+)
CAST/EiJ	ENSTCUG00005038558	pseudogene	Chr4:48546023-48546642 (+)
CBA/J	ENSMUSG00210019526	pseudogene	Chr4:48203988-48204608 (+)
DBA/2J	ENSMUSG00185034254	pseudogene	Chr4:48552538-48553158 (+)
FVB/NJ	ENSMUSG00205023880	pseudogene	Chr4:47816103-47816722 (+)
JF1/MsJ	ENSUMUG00000038585	pseudogene	Chr4:48712147-48712763 (+)
LP/J	ENSMUSG00230005180	pseudogene	Chr4:52110120-52110739 (+)
NOD/ShiLtJ	ENSMUSG00190026466	pseudogene	Chr4:48412853-48413472 (+)
NZO/HlLtJ	ENSMUSG00225003174	pseudogene	Chr4:56706343-56706962 (+)
PWK/PhJ	ENSLUMG00010012878	pseudogene	Chr4:47668154-47668770 (+)
SPRET/EiJ	ENSMSPG00010009603	pseudogene	Chr4:48825661-48826280 (+)
WSB/EiJ	ENSIUOG00005004713	pseudogene	Chr4:48156723-48157343 (+)

Homology

• Gene Tree
  Gm12466
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083539 (Evidence)
• NCBI Gene
  100041026

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083539	Ensembl Gene Model | MGI Sequence Detail	620	C57BL/6J
transcript	ENSMUST00000121199	Ensembl | MGI Sequence Detail	620	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12466:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37273	Chr4:52240860-52240872 (+)	-37 bp