Rpl9-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl9-ps2
• Name
  ribosomal protein L9, pseudogene 2
• Synonyms
  Gm12172

• Feature Type
  pseudogene
• IDs
  MGI:3651724
  NCBI Gene: 435256
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:46452858-46453434 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 28.00 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651724	pseudogene	Chr11:46452834-46453534 (+)
129S1/SvImJ	ENSMUSG00200040354	pseudogene	Chr11:43511588-43512164 (+)
A/J	ENSMUSG00195037704	pseudogene	Chr11:43455680-43456256 (+)
AKR/J	ENSMUSG00220039361	pseudogene	Chr11:43647858-43648434 (+)
BALB/cJ	ENSMUSG00180038834	pseudogene	Chr11:43445440-43446016 (+)
C3H/HeJ	ENSMUSG00175039797	pseudogene	Chr11:43487795-43488371 (+)
C57BL/6NJ	ENSMUSG00215038548	pseudogene	Chr11:43397087-43397663 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009571	pseudogene	Chr11:41701904-41702479 (+)
CAST/EiJ	ENSTCUG00005044828	pseudogene	Chr11:43178217-43178793 (+)
CBA/J	ENSMUSG00210030025	pseudogene	Chr11:43338907-43339483 (+)
DBA/2J	ENSMUSG00185029164	pseudogene	Chr11:43515525-43516101 (+)
FVB/NJ	ENSMUSG00205037889	pseudogene	Chr11:43448949-43449525 (+)
JF1/MsJ	ENSUMUG00000044012	pseudogene	Chr11:43774829-43775399 (+)
LP/J	ENSMUSG00230034107	pseudogene	Chr11:44665320-44665896 (+)
NOD/ShiLtJ	ENSMUSG00190043285	pseudogene	Chr11:43586458-43587034 (+)
NZO/HlLtJ	ENSMUSG00225036107	pseudogene	Chr11:46613932-46614508 (+)
PWK/PhJ	ENSLUMG00010036266	pseudogene	Chr11:43337510-43338086 (+)
SPRET/EiJ	ENSMSPG00010020132	pseudogene	Chr11:43972243-43972819 (+)
WSB/EiJ	ENSIUOG00005042053	pseudogene	Chr11:43331109-43331685 (+)

Homology

• Gene Tree
  Rpl9-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl9-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082749 (Evidence)
• NCBI Gene
  435256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082749	Ensembl Gene Model | MGI Sequence Detail	577	C57BL/6J
transcript	ENSMUST00000120821	Ensembl | MGI Sequence Detail	577	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl9-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101119	Chr11:46452831-46452833 (+)	-26 bp