Gm13219 Gene Detail

Summary

• Symbol
  Gm13219
• Name
  predicted gene 13219

• Feature Type
  lncRNA gene
• IDs
  MGI:3651678
  NCBI Gene: 100040710
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr2:9357242-9452487 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 6.25 cM

Strain
Comparison

• SNPs within 2kb
  2836 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651678	lncRNA gene	Chr2:9357071-9472125 (+)
129S1/SvImJ	ENSMUSG00200032449	lncRNA gene	Chr2:6210199-6305453 (+)
A/J	ENSMUSG00195020273	lncRNA gene	Chr2:6354972-6450862 (+)
AKR/J	ENSMUSG00220007042	lncRNA gene	Chr2:6323445-6418688 (+)
BALB/cJ	ENSMUSG00180034519	lncRNA gene	Chr2:6426030-6521287 (+)
C3H/HeJ	ENSMUSG00175018739	lncRNA gene	Chr2:6312744-6408008 (+)
C57BL/6NJ	ENSMUSG00215025713	lncRNA gene	Chr2:6446557-6541817 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005331	lincRNA gene	Chr2:5886427-5984936 (+)
CAST/EiJ	ENSTCUG00005005209	lncRNA gene	Chr2:6246059-6341876 (+)
CBA/J	ENSMUSG00210028448	lncRNA gene	Chr2:6359377-6454631 (+)
DBA/2J	ENSMUSG00185013075	lncRNA gene	Chr2:6312749-6408005 (+)
FVB/NJ	ENSMUSG00205037497	lncRNA gene	Chr2:6309062-6404962 (+)
JF1/MsJ	ENSUMUG00000004121	lncRNA gene	Chr2:6276038-6372399 (+)
LP/J	ENSMUSG00230003587	lncRNA gene	Chr2:8258424-8353668 (+)
NOD/ShiLtJ	ENSMUSG00190006607	lncRNA gene	Chr2:6327760-6423014 (+)
NZO/HlLtJ	ENSMUSG00225002771	lncRNA gene	Chr2:15997802-16093059 (+)
PWK/PhJ	ENSLUMG00010031052	lncRNA gene	Chr2:6387983-6494442 (+)
SPRET/EiJ	ENSMSPG00010028790	lncRNA gene	Chr2:6419780-6515641 (+)
WSB/EiJ	ENSIUOG00005024514	lncRNA gene	Chr2:6373030-6468340 (+)

Homology

• Gene Tree
  Gm13219
  

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3

• Ensembl
  ENSMUSG00000079604 (Evidence)
• NCBI Gene
  100040710

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079604	Ensembl Gene Model | MGI Sequence Detail	95246	C57BL/6J
transcript	ENSMUST00000144870	Ensembl | MGI Sequence Detail	3019	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm13219:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16049	Chr2:9357279-9357291 (+)	43 bp
Tssr16050	Chr2:9357292-9357310 (+)	59 bp
Tssr16051	Chr2:9373273-9373322 (+)	16,056 bp
Tssr16052	Chr2:9373849-9373864 (+)	16,615 bp
Tssr16053	Chr2:9373875-9373886 (+)	16,639 bp
Tssr16054	Chr2:9381091-9381136 (+)	23,872 bp
Tssr16055	Chr2:9383052-9383072 (+)	25,820 bp