Gm12551 Pseudogene Detail

Summary

• Symbol
  Gm12551
• Name
  predicted gene 12551

• Feature Type
  pseudogene
• IDs
  MGI:3651664
  NCBI Gene: 101055843
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:86545312-86549488 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 40.69 cM

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651664	pseudogene	Chr4:86545094-86550458 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040330	pseudogene	Chr4:83380526-83412867 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040331	pseudogene	Chr4:83568722-83623392 (-)
C3H/HeJ	MGP_C3HHeJ_G0039956	pseudogene	Chr4:86135541-86141627 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040935	pseudogene	Chr4:89675518-89684967 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039921	pseudogene	Chr4:92461943-92466731 (-)
DBA/2J	MGP_DBA2J_G0040128	pseudogene	Chr4:83135828-83145974 (-)
FVB/NJ	MGP_FVBNJ_G0040083	pseudogene	Chr4:82114661-82122673 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041025	pseudogene	Chr4:85556694-85562683 (-)
PWK/PhJ	MGP_PWKPhJ_G0038723	pseudogene	Chr4:81466348-81515259 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039271	pseudogene	Chr4:85786223-85793192 (-)

Homology

• Gene Tree
  Gm12551
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Endonuclease-mediated
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  5 involving Gm12551
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000081169 (Evidence)
• NCBI Gene
  101055843

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081169	Ensembl Gene Model | MGI Sequence Detail	4177	C57BL/6J
transcript	ENSMUST00000122073	Ensembl | MGI Sequence Detail	726	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm12551:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42327	Chr4:86551397-86551402 (-)	-1,912 bp