Gm12860 Gene Detail

Summary

• Symbol
  Gm12860
• Name
  predicted gene 12860

• Feature Type
  lncRNA gene
• IDs
  MGI:3651651
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:120445854-120495453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.52 cM

Strain
Comparison

• SNPs within 2kb
  1503 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651651	lncRNA gene	Chr4:120445854-120495453 (+)
129S1/SvImJ	ENSMUSG00200014947	lncRNA gene	Chr4:114380077-114403003 (+)
A/J	ENSMUSG00195033468	lncRNA gene	Chr4:115614390-115637323 (+)
AKR/J	ENSMUSG00220022447	lncRNA gene	Chr4:114992749-115015178 (+)
BALB/cJ	ENSMUSG00180047584	lncRNA gene	Chr4:113667756-113690681 (+)
C3H/HeJ	ENSMUSG00175025951	lncRNA gene	Chr4:114680883-114703807 (+)
C57BL/6NJ	ENSMUSG00215039941	lncRNA gene	Chr4:115812718-115835143 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005910	lincRNA gene	Chr4:111150605-111157728 (+)
CAST/EiJ	ENSTCUG00005046821	lncRNA gene	Chr4:114490393-114512661 (+)
CBA/J	ENSMUSG00210052705	lncRNA gene	Chr4:114287373-114310301 (+)
DBA/2J	ENSMUSG00185049161	lncRNA gene	Chr4:115842393-115865313 (+)
FVB/NJ	ENSMUSG00205029724	lncRNA gene	Chr4:113768675-113791155 (+)
JF1/MsJ	ENSUMUG00000025547	lncRNA gene	Chr4:115755593-115778133 (+)
LP/J	ENSMUSG00230046311	lncRNA gene	Chr4:119198366-119221281 (+)
NOD/ShiLtJ	ENSMUSG00190045029	lncRNA gene	Chr4:113680736-113703661 (+)
NZO/HlLtJ	ENSMUSG00225016777	lncRNA gene	Chr4:124743632-124766054 (+)
PWK/PhJ	ENSLUMG00010047224	lncRNA gene	Chr4:113167894-113190404 (+)
SPRET/EiJ	ENSMSPG00010043240	lncRNA gene	Chr4:115258815-115281264 (+)
WSB/EiJ	ENSIUOG00005048680	lncRNA gene	Chr4:113989734-114012195 (+)

Homology

• Gene Tree
  Gm12860
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12860
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53

• Ensembl
  ENSMUSG00000086187 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086187	Ensembl Gene Model | MGI Sequence Detail	49600	C57BL/6J
transcript	ENSMUST00000315507	Ensembl | MGI Sequence Detail	1258	Not Applicable

References

• Summaries
  All 13

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12860:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38799	Chr4:120473013-120473029 (+)	27,167 bp