Gm12655 Gene Detail

Summary

• Symbol
  Gm12655
• Name
  predicted gene 12655

• Feature Type
  lncRNA gene
• IDs
  MGI:3651648
  NCBI Gene: 115489886
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:94348514-94365417 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 43.31 cM

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651648	lncRNA gene	Chr4:94348510-94365475 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015557	unclassified non-coding RNA gene	Chr4:94514276-94530884 (-)
A/J	MGP_AJ_G0015534	unclassified non-coding RNA gene	Chr4:91203687-91220054 (-)
AKR/J	MGP_AKRJ_G0015498	unclassified non-coding RNA gene	Chr4:93364416-93380645 (-)
BALB/cJ	MGP_BALBcJ_G0015496	unclassified non-coding RNA gene	Chr4:91453141-91469242 (-)
C3H/HeJ	MGP_C3HHeJ_G0015318	unclassified non-coding RNA gene	Chr4:94206686-94223773 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015949	unclassified non-coding RNA gene	Chr4:98121158-98138742 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013685	unclassified non-coding RNA gene	Chr4:86735304-86751263 (-)
CAST/EiJ	MGP_CASTEiJ_G0014873	unclassified non-coding RNA gene	Chr4:92077114-92093197 (-)
CBA/J	MGP_CBAJ_G0015299	unclassified non-coding RNA gene	Chr4:101109438-101129547 (-)
DBA/2J	MGP_DBA2J_G0015393	unclassified non-coding RNA gene	Chr4:90984043-91000493 (-)
FVB/NJ	MGP_FVBNJ_G0015400	unclassified non-coding RNA gene	Chr4:89843615-89859853 (-)
LP/J	MGP_LPJ_G0015473	unclassified non-coding RNA gene	Chr4:94836075-94852978 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015423	unclassified non-coding RNA gene	Chr4:106868081-106885312 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015991	unclassified non-coding RNA gene	Chr4:93657982-93674263 (-)
PWK/PhJ	MGP_PWKPhJ_G0014658	unclassified non-coding RNA gene	Chr4:89141457-89158994 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014447	unclassified non-coding RNA gene	Chr4:91073917-91091425 (-)
WSB/EiJ	MGP_WSBEiJ_G0014978	unclassified non-coding RNA gene	Chr4:93811908-93830495 (-)

Homology

• Gene Tree
  Gm12655
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12655
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  6

• Ensembl
  ENSMUSG00000087128 (Evidence)
• NCBI Gene
  115489886

Representative Sequences			Length	Strain/Species
genomic	115489886	NCBI Gene Model | MGI Sequence Detail	16904	C57BL/6J
transcript	NR_176042	RefSeq | MGI Sequence Detail	1759	ZRU/MplStud

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12655:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42439	Chr4:94365404-94365444 (-)	-7 bp