Tmc4-ps Pseudogene Detail

Summary

• Symbol
  Tmc4-ps
• Name
  Tmc4 retrotransposed pseudogene
• Synonyms
  Gm12483

• Feature Type
  pseudogene
• IDs
  MGI:3651628
  NCBI Gene: 102636091
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:52443915-52444172 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.31 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651628	pseudogene	Chr4:52443748-52445426 (-)
129S1/SvImJ	ENSMUSG00200003247	pseudogene	Chr4:48510749-48511006 (-)
A/J	ENSMUSG00195006497	pseudogene	Chr4:48913023-48913280 (-)
AKR/J	ENSMUSG00220003111	pseudogene	Chr4:48682385-48682642 (-)
BALB/cJ	ENSMUSG00180030680	pseudogene	Chr4:48500362-48500619 (-)
C3H/HeJ	ENSMUSG00175021521	pseudogene	Chr4:48651493-48651750 (-)
C57BL/6NJ	ENSMUSG00215027007	pseudogene	Chr4:48496641-48496898 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011260	pseudogene	Chr4:46074390-46074645 (-)
CAST/EiJ	ENSTCUG00005038507	pseudogene	Chr4:48742005-48742262 (-)
CBA/J	ENSMUSG00210019523	pseudogene	Chr4:48410467-48410724 (-)
DBA/2J	ENSMUSG00185034230	pseudogene	Chr4:48759004-48759261 (-)
FVB/NJ	ENSMUSG00205023745	pseudogene	Chr4:48019195-48019452 (-)
JF1/MsJ	ENSUMUG00000038570	pseudogene	Chr4:48950146-48950403 (-)
LP/J	ENSMUSG00230005208	pseudogene	Chr4:52313318-52313575 (-)
NOD/ShiLtJ	ENSMUSG00190026404	pseudogene	Chr4:48616229-48616486 (-)
NZO/HlLtJ	ENSMUSG00225003317	pseudogene	Chr4:56909489-56909746 (-)
PWK/PhJ	ENSLUMG00010012871	pseudogene	Chr4:47887879-47888136 (-)
SPRET/EiJ	ENSMSPG00010009579	pseudogene	Chr4:49028866-49029123 (-)
WSB/EiJ	ENSIUOG00005004703	pseudogene	Chr4:48364043-48364300 (-)

Homology

• Gene Tree
  Tmc4-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000084380 (Evidence)
• NCBI Gene
  102636091

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084380	Ensembl Gene Model | MGI Sequence Detail	258	C57BL/6J
transcript	ENSMUST00000117819	Ensembl | MGI Sequence Detail	258	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Tmc4-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41708	Chr4:52445415-52445440 (-)	-1,256 bp