Gm11540 Pseudogene Detail

Summary

• Symbol
  Gm11540
• Name
  predicted gene 11540

• Feature Type
  pseudogene
• IDs
  MGI:3651617
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:94498228-94499862 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.90 cM

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651617	pseudogene	Chr11:94498228-94499862 (+)
129S1/SvImJ	ENSMUSG00200020420	pseudogene	Chr11:91746678-91748324 (+)
A/J	ENSMUSG00195009826	pseudogene	Chr11:91478904-91480570 (+)
AKR/J	ENSMUSG00220012357	pseudogene	Chr11:91731360-91733030 (+)
BALB/cJ	ENSMUSG00180011928	pseudogene	Chr11:91715912-91717546 (+)
C3H/HeJ	ENSMUSG00175033058	pseudogene	Chr11:91738476-91740146 (+)
C57BL/6NJ	ENSMUSG00215029564	pseudogene	Chr11:91313941-91315579 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037102	pseudogene	Chr11:90332266-90334061 (+)
CAST/EiJ	ENSTCUG00005017055	pseudogene	Chr11:91175665-91177323 (+)
CBA/J	ENSMUSG00210040757	pseudogene	Chr11:91442005-91443675 (+)
DBA/2J	ENSMUSG00185053705	pseudogene	Chr11:91762709-91764343 (+)
FVB/NJ	ENSMUSG00205023138	pseudogene	Chr11:91653274-91654908 (+)
JF1/MsJ	ENSUMUG00000056000	pseudogene	Chr11:92109772-92111423 (+)
LP/J	ENSMUSG00230051443	pseudogene	Chr11:92829928-92831574 (+)
NOD/ShiLtJ	ENSMUSG00190052837	pseudogene	Chr11:91809683-91811317 (+)
NZO/HlLtJ	ENSMUSG00225053388	pseudogene	Chr11:94870458-94872092 (+)
PWK/PhJ	ENSLUMG00010033605	pseudogene	Chr11:91649070-91650706 (+)
SPRET/EiJ	ENSMSPG00010029540	pseudogene	Chr11:92148847-92150496 (+)
WSB/EiJ	ENSIUOG00005050888	pseudogene	Chr11:91592104-91593737 (+)

Homology

• Gene Tree
  Gm11540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm11540
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082945 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082945	Ensembl Gene Model | MGI Sequence Detail	1635	C57BL/6J
transcript	ENSMUST00000117457	Ensembl | MGI Sequence Detail	780	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307