Gm14461 Gene Detail

Summary

• Symbol
  Gm14461
• Name
  predicted gene 14461
• Synonyms
  MAARS

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3651589
  NCBI Gene: 329436
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:78067891-78132574 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 46.77 cM

Strain
Comparison

• SNPs within 2kb
  2020 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651589	protein coding gene	Chr2:77878840-78133485 (+)
129S1/SvImJ	ENSMUSG00200004700	lncRNA gene	Chr2:74917048-75171291 (+)
A/J	ENSMUSG00195020605	lncRNA gene	Chr2:75089836-75344087 (+)
AKR/J	ENSMUSG00220002621	lncRNA gene	Chr2:75037022-75290865 (+)
BALB/cJ	ENSMUSG00180007293	lncRNA gene	Chr2:75025898-75280142 (+)
C3H/HeJ	ENSMUSG00175011583	lncRNA gene	Chr2:75149082-75403331 (+)
C57BL/6NJ	ENSMUSG00215026087	lncRNA gene	Chr2:74994702-75248957 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005418	lincRNA gene	Chr2:73004194-73070156 (+)
CAST/EiJ	ENSTCUG00005032790	lncRNA gene	Chr2:74495787-74746214 (+)
CBA/J	ENSMUSG00210002557	lncRNA gene	Chr2:75188419-75442650 (+)
DBA/2J	ENSMUSG00185011946	lncRNA gene	Chr2:75024295-75278551 (+)
FVB/NJ	ENSMUSG00205021400	lncRNA gene	Chr2:74387842-74607861 (+)
JF1/MsJ	ENSUMUG00000046059	lncRNA gene	Chr2:74700620-74982786 (+)
LP/J	ENSMUSG00230026844	lncRNA gene	Chr2:76830189-77084399 (+)
NOD/ShiLtJ	ENSMUSG00190011548	lncRNA gene	Chr2:75101025-75355860 (+)
NZO/HlLtJ	ENSMUSG00225003601	lncRNA gene	Chr2:84588885-84843086 (+)
PWK/PhJ	ENSLUMG00010033591	lncRNA gene	Chr2:74919393-75171611 (+)
SPRET/EiJ	ENSMSPG00010022394	lncRNA gene	Chr2:76219447-76489298 (+)
WSB/EiJ	ENSIUOG00005011764	lncRNA gene	Chr2:80585050-80840496 (-)

Homology

• Gene Tree
  Gm14461
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm14461
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  143
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054510 (Evidence)
• NCBI Gene
  329436

Representative Sequences			Length	Strain/Species
genomic	329436	NCBI Gene Model | MGI Sequence Detail	64684	C57BL/6J
transcript	NM_177843	RefSeq | MGI Sequence Detail	1780	C57BL/6
polypeptide	NP_808511	RefSeq | MGI Sequence Detail	102	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:391017 Cai J, et al., Silencing of lncRNA Gm14461 alleviates pain in trigeminal neuralgia through inhibiting astrocyte activation. IUBMB Life. 2020 Dec;72(12):2663-2671

TSS for Gm14461:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18515	Chr2:78123504-78123655 (+)	55,689 bp