Ptma-ps2 Pseudogene Detail

Summary

• Symbol
  Ptma-ps2
• Name
  prothymosin alpha, pseudogene 2
• Synonyms
  Gm12504

• Feature Type
  pseudogene
• IDs
  MGI:3651567
  NCBI Gene: 115489981
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:44123238-44123543 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.13 cM

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651567	pseudogene	Chr4:44087172-44124191 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039713	pseudogene	Chr4:42273437-42275672 (+)
A/J	MGP_AJ_G0039711	pseudogene	Chr4:40770420-40772650 (+)
AKR/J	MGP_AKRJ_G0039637	pseudogene	Chr4:41730185-41732415 (+)
BALB/cJ	MGP_BALBcJ_G0039681	pseudogene	Chr4:40866926-40869156 (+)
C3H/HeJ	MGP_C3HHeJ_G0039343	pseudogene	Chr4:42340479-42343210 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040242	pseudogene	Chr4:43883441-43888914 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038463	pseudogene	Chr4:41857968-41860145 (+)
CBA/J	MGP_CBAJ_G0039314	pseudogene	Chr4:45242271-45247806 (+)
DBA/2J	MGP_DBA2J_G0039509	pseudogene	Chr4:40675641-40677872 (+)
FVB/NJ	MGP_FVBNJ_G0039466	pseudogene	Chr4:39906032-39908263 (+)
LP/J	MGP_LPJ_G0039547	pseudogene	Chr4:42347241-42349471 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039468	pseudogene	Chr4:48436457-48438687 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040343	pseudogene	Chr4:41942880-41945112 (+)
PWK/PhJ	MGP_PWKPhJ_G0038139	pseudogene	Chr4:40725286-40727383 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038697	pseudogene	Chr4:41815307-41817538 (+)

Homology

• Gene Tree
  Ptma-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically and radiation induced
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Ptma-ps2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  4

• Ensembl
  ENSMUSG00000084274 (Evidence)
• NCBI Gene
  115489981

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084274	Ensembl Gene Model | MGI Sequence Detail	306	C57BL/6J
transcript	ENSMUST00000148026	Ensembl | MGI Sequence Detail	306	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;