Rpl23a-ps2 Pseudogene Detail

Summary

• Symbol
  Rpl23a-ps2
• Name
  ribosomal protein L23A, pseudogene 2
• Synonyms
  Gm12323

• Feature Type
  pseudogene
• IDs
  MGI:3651561
  NCBI Gene: 668461
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:70770254-70770727 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 43.21 cM

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651561	pseudogene	Chr11:70770222-70770760 (+)
129S1/SvImJ	ENSMUSG00200049745	pseudogene	Chr11:67717402-67717875 (+)
A/J	ENSMUSG00195052659	pseudogene	Chr11:67744005-67744478 (+)
AKR/J	ENSMUSG00220054189	pseudogene	Chr11:67861133-67861606 (+)
BALB/cJ	ENSMUSG00180054146	pseudogene	Chr11:67812287-67812760 (+)
C3H/HeJ	ENSMUSG00175054424	pseudogene	Chr11:67762648-67763121 (+)
C57BL/6NJ	ENSMUSG00215055075	pseudogene	Chr11:67539806-67540279 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009637	pseudogene	Chr11:65643919-65644380 (+)
CAST/EiJ	ENSTCUG00005053651	pseudogene	Chr11:67306520-67306995 (+)
CBA/J	ENSMUSG00210054407	pseudogene	Chr11:67616729-67617202 (+)
DBA/2J	ENSMUSG00185056827	pseudogene	Chr11:67854943-67855428 (+)
FVB/NJ	ENSMUSG00205053969	pseudogene	Chr11:67710140-67710613 (+)
JF1/MsJ	ENSUMUG00000057122	pseudogene	Chr11:68253545-68254030 (+)
LP/J	ENSMUSG00230053865	pseudogene	Chr11:68927923-68928396 (+)
NOD/ShiLtJ	ENSMUSG00190054301	pseudogene	Chr11:67850243-67850716 (+)
NZO/HlLtJ	ENSMUSG00225040284	pseudogene	Chr11:71109119-71109592 (+)
PWK/PhJ	ENSLUMG00010053581	pseudogene	Chr11:67722029-67722513 (+)
SPRET/EiJ	ENSMSPG00010049625	pseudogene	Chr11:68450403-68450876 (+)
WSB/EiJ	ENSIUOG00005052875	pseudogene	Chr11:67742345-67742823 (+)

Homology

• Gene Tree
  Rpl23a-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl23a-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081968 (Evidence)
• NCBI Gene
  668461

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081968	Ensembl Gene Model | MGI Sequence Detail	474	C57BL/6J
transcript	ENSMUST00000119375	Ensembl | MGI Sequence Detail	474	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl23a-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102799	Chr11:70770238-70770252 (+)	-9 bp