Gm12925 Gene Detail

Summary

• Symbol
  Gm12925
• Name
  predicted gene 12925

• Feature Type
  lncRNA gene
• IDs
  MGI:3651536
  NCBI Gene: 102633214
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:123559674-123565003 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM

Strain
Comparison

• SNPs within 2kb
  203 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651536	lncRNA gene	Chr4:123557024-123565010 (+)
129S1/SvImJ	ENSMUSG00200014856	lncRNA gene	Chr4:116995640-117000985 (+)
A/J	ENSMUSG00195033487	lncRNA gene	Chr4:118326318-118331664 (+)
AKR/J	ENSMUSG00220023220	lncRNA gene	Chr4:117294366-117299704 (+)
BALB/cJ	ENSMUSG00180047289	lncRNA gene	Chr4:115964593-115969942 (+)
C3H/HeJ	ENSMUSG00175027572	lncRNA gene	Chr4:116977590-116982938 (+)
C57BL/6NJ	ENSMUSG00215040097	lncRNA gene	Chr4:118471463-118476801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003555	antisense lncRNA gene	Chr4:113450760-113456006 (+)
CAST/EiJ	ENSTCUG00005046351	lncRNA gene	Chr4:117834025-117839363 (+)
CBA/J	ENSMUSG00210052745	lncRNA gene	Chr4:116606512-116611862 (+)
DBA/2J	ENSMUSG00185049428	lncRNA gene	Chr4:118139136-118144488 (+)
FVB/NJ	ENSMUSG00205028980	lncRNA gene	Chr4:116351140-116356502 (+)
JF1/MsJ	ENSUMUG00000027996	lncRNA gene	Chr4:118763052-118768442 (+)
LP/J	ENSMUSG00230047014	lncRNA gene	Chr4:121933654-121938998 (+)
NOD/ShiLtJ	ENSMUSG00190047895	lncRNA gene	Chr4:116344711-116350071 (+)
NZO/HlLtJ	ENSMUSG00225016447	lncRNA gene	Chr4:127841306-127846642 (+)
PWK/PhJ	ENSLUMG00010047989	lncRNA gene	Chr4:115794369-115799758 (+)
SPRET/EiJ	ENSMSPG00010042038	lncRNA gene	Chr4:117920711-117926037 (+)
WSB/EiJ	ENSIUOG00005047861	lncRNA gene	Chr4:116207899-116213237 (+)

Homology

• Gene Tree
  Gm12925
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  65
• Chemically induced (other)
  2
• Gene trapped
  61
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12925
• Find Mice (IMSR)
  32 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000087307 (Evidence)
• NCBI Gene
  102633214

Representative Sequences			Length	Strain/Species
genomic	102633214	NCBI Gene Model | MGI Sequence Detail	5330	C57BL/6J
transcript	NR_136925	RefSeq | MGI Sequence Detail	945	ZRU/MplStud

References

• Summaries
  All 17

  Phenotypes 11
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38865	Chr4:123558601-123558625 (+)	-1,061 bp