Gm12926 Pseudogene Detail

Summary

• Symbol
  Gm12926
• Name
  predicted gene 12926

• Feature Type
  pseudogene
• IDs
  MGI:3651535
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:123524088-123524496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651535	pseudogene	Chr4:123524088-123524496 (+)
129S1/SvImJ	ENSMUSG00200014879	pseudogene	Chr4:116960035-116960443 (+)
A/J	ENSMUSG00195033568	pseudogene	Chr4:118290700-118291108 (+)
AKR/J	ENSMUSG00220023255	pseudogene	Chr4:117258779-117259187 (+)
BALB/cJ	ENSMUSG00180047395	pseudogene	Chr4:115929000-115929408 (+)
C3H/HeJ	ENSMUSG00175027620	pseudogene	Chr4:116941996-116942404 (+)
C57BL/6NJ	ENSMUSG00215040138	pseudogene	Chr4:118435866-118436274 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011420	pseudogene	Chr4:113413324-113413728 (+)
CAST/EiJ	ENSTCUG00005046380	pseudogene	Chr4:117798545-117798953 (+)
CBA/J	ENSMUSG00210052752	pseudogene	Chr4:116570920-116571328 (+)
DBA/2J	ENSMUSG00185049471	pseudogene	Chr4:118103546-118103954 (+)
FVB/NJ	ENSMUSG00205029105	pseudogene	Chr4:116315480-116315888 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230046983	pseudogene	Chr4:121898050-121898458 (+)
NOD/ShiLtJ	ENSMUSG00190047932	pseudogene	Chr4:116309055-116309463 (+)
NZO/HlLtJ	ENSMUSG00225016406	pseudogene	Chr4:127805716-127806124 (+)
PWK/PhJ	ENSLUMG00010048025	pseudogene	Chr4:115758951-115759359 (+)
SPRET/EiJ	ENSMSPG00010042105	pseudogene	Chr4:117884557-117884937 (+)
WSB/EiJ	ENSIUOG00005047890	pseudogene	Chr4:116172298-116172706 (+)

Homology

• Gene Tree
  Gm12926
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  2
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12926
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081585 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081585	Ensembl Gene Model | MGI Sequence Detail	409	C57BL/6J
transcript	ENSMUST00000121158	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm12926:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38864	Chr4:123524044-123524049 (+)	-41 bp