Gm12002 Gene Detail

Summary

• Symbol
  Gm12002
• Name
  predicted gene 12002

• Feature Type
  lncRNA gene
• IDs
  MGI:3651521
  NCBI Gene: 100503630
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:12264489-12339534 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 7.30 cM

Strain
Comparison

• SNPs within 2kb
  2108 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651521	lncRNA gene	Chr11:12263640-12339534 (+)
129S1/SvImJ	ENSMUSG00200034980	lncRNA gene	Chr11:9290505-9365311 (+)
A/J	ENSMUSG00195024381	lncRNA gene	Chr11:9153117-9227950 (+)
AKR/J	ENSMUSG00220009465	lncRNA gene	Chr11:9189683-9271306 (+)
BALB/cJ	ENSMUSG00180028850	lncRNA gene	Chr11:9161735-9236568 (+)
C3H/HeJ	ENSMUSG00175010328	lncRNA gene	Chr11:9176740-9258355 (+)
C57BL/6NJ	ENSMUSG00215035566	lncRNA gene	Chr11:9175257-9250308 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002571	antisense lncRNA gene	Chr11:8821842-8857946 (+)
CAST/EiJ	ENSTCUG00005040139	lncRNA gene	Chr11:9254612-9331188 (+)
CBA/J	ENSMUSG00210018517	lncRNA gene	Chr11:9162678-9237478 (+)
DBA/2J	ENSMUSG00185018921	lncRNA gene	Chr11:9258649-9333458 (+)
FVB/NJ	ENSMUSG00205039164	lncRNA gene	Chr11:9205420-9289536 (+)
JF1/MsJ	ENSUMUG00000049411	lncRNA gene	Chr11:9454924-9527709 (+)
LP/J	ENSMUSG00230004663	lncRNA gene	Chr11:10312636-10387456 (+)
NOD/ShiLtJ	ENSMUSG00190042991	lncRNA gene	Chr11:9177160-9258778 (+)
NZO/HlLtJ	ENSMUSG00225033318	lncRNA gene	Chr11:12328768-12403590 (+)
PWK/PhJ	ENSLUMG00010019732	lncRNA gene	Chr11:9139452-9214647 (+)
SPRET/EiJ	ENSMSPG00010009141	lncRNA gene	Chr11:9180465-9260437 (+)
WSB/EiJ	ENSIUOG00005007863	lncRNA gene	Chr11:9143161-9217974 (+)

Homology

• Gene Tree
  Gm12002
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  5

• Ensembl
  ENSMUSG00000086584 (Evidence)
• NCBI Gene
  100503630

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086584	Ensembl Gene Model | MGI Sequence Detail	75046	C57BL/6J
transcript	ENSMUST00000323711	Ensembl | MGI Sequence Detail	1893	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm12002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100396	Chr11:12264509-12264529 (+)	30 bp