Gm14020 Pseudogene Detail

Summary

• Symbol
  Gm14020
• Name
  predicted gene 14020

• Feature Type
  pseudogene
• IDs
  MGI:3651446
  NCBI Gene: 100417270
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:121549011-121549672 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 60.43 cM

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651446	pseudogene	Chr2:121548980-121549775 (+)
129S1/SvImJ	ENSMUSG00200048548	pseudogene	Chr2:118482015-118482693 (+)
A/J	ENSMUSG00195025544	pseudogene	Chr2:118521880-118522558 (+)
AKR/J	ENSMUSG00220043842	pseudogene	Chr2:118444721-118445399 (+)
BALB/cJ	ENSMUSG00180045931	pseudogene	Chr2:118322456-118323134 (+)
C3H/HeJ	ENSMUSG00175028887	pseudogene	Chr2:118796552-118797230 (+)
C57BL/6NJ	ENSMUSG00215030023	pseudogene	Chr2:118467413-118468074 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010603	pseudogene	Chr2:114568462-114569152 (+)
CAST/EiJ	ENSTCUG00005017007	pseudogene	Chr2:117731965-117732626 (+)
CBA/J	ENSMUSG00210007565	pseudogene	Chr2:118637420-118638098 (+)
DBA/2J	ENSMUSG00185048099	pseudogene	Chr2:118319774-118320452 (+)
FVB/NJ	ENSMUSG00205043860	pseudogene	Chr2:117545122-117545800 (+)
JF1/MsJ	ENSUMUG00000041810	pseudogene	Chr2:118215581-118216242 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190046324	pseudogene	Chr2:118569142-118569820 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010048478	pseudogene	Chr2:118151952-118152613 (+)
SPRET/EiJ	ENSMSPG00010045547	pseudogene	Chr2:120550213-120550889 (+)
WSB/EiJ	ENSIUOG00005028750	pseudogene	Chr2:118293255-118293933 (+)

Homology

• Gene Tree
  Gm14020
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm14020
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084244 (Evidence)
• NCBI Gene
  100417270

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084244	Ensembl Gene Model | MGI Sequence Detail	662	C57BL/6J
transcript	ENSMUST00000118165	Ensembl | MGI Sequence Detail	662	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm14020:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19782	Chr2:121548986-121548990 (+)	-23 bp