Gm13522 Gene Detail

Summary

• Symbol
  Gm13522
• Name
  predicted gene 13522

• Feature Type
  lncRNA gene
• IDs
  MGI:3651428
  NCBI Gene: 108168754
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:52268606-52280320 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 29.98 cM

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651428	lncRNA gene	Chr2:52257075-52280320 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003562	antisense lncRNA gene	Chr2:51712091-51714427 (+)
A/J	MGP_AJ_G0003542	antisense lncRNA gene	Chr2:49719208-49721542 (+)
AKR/J	MGP_AKRJ_G0003521	antisense lncRNA gene	Chr2:51151268-51153604 (+)
BALB/cJ	MGP_BALBcJ_G0003531	antisense lncRNA gene	Chr2:49817329-49819673 (+)
C3H/HeJ	MGP_C3HHeJ_G0003479	antisense lncRNA gene	Chr2:51148718-51151054 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003669	antisense lncRNA gene	Chr2:53241862-53244190 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003179	antisense lncRNA gene	Chr2:47700435-47702785 (+)
CAST/EiJ	MGP_CASTEiJ_G0003442	antisense lncRNA gene	Chr2:51256650-51259014 (+)
CBA/J	MGP_CBAJ_G0003476	antisense lncRNA gene	Chr2:55253787-55256123 (+)
DBA/2J	MGP_DBA2J_G0003484	antisense lncRNA gene	Chr2:49370587-49372923 (+)
FVB/NJ	MGP_FVBNJ_G0003503	antisense lncRNA gene	Chr2:49056817-49059190 (+)
LP/J	MGP_LPJ_G0003557	antisense lncRNA gene	Chr2:51595622-51597966 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003491	antisense lncRNA gene	Chr2:56276342-56278678 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003672	antisense lncRNA gene	Chr2:51064439-51066783 (+)
PWK/PhJ	MGP_PWKPhJ_G0003397	antisense lncRNA gene	Chr2:49251915-49254326 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003342	antisense lncRNA gene	Chr2:51283034-51285398 (+)
WSB/EiJ	MGP_WSBEiJ_G0003477	antisense lncRNA gene	Chr2:51352760-51355092 (+)

Homology

• Gene Tree
  Gm13522
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13522
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000086447 (Evidence)
• NCBI Gene
  108168754

Representative Sequences			Length	Strain/Species
genomic	108168754	NCBI Gene Model | MGI Sequence Detail	11715	C57BL/6J
transcript	NR_166117	RefSeq | MGI Sequence Detail	639	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;