Gm12030 Pseudogene Detail

Summary

• Symbol
  Gm12030
• Name
  predicted gene 12030

• Feature Type
  pseudogene
• IDs
  MGI:3651405
  NCBI Gene: 108167861
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:20092568-20092790 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 12.90 cM

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651405	pseudogene	Chr11:20092567-20092790 (+)
129S1/SvImJ	ENSMUSG00200022379	pseudogene	Chr11:17102853-17103075 (+)
A/J	ENSMUSG00195005274	pseudogene	Chr11:16951778-16952000 (+)
AKR/J	ENSMUSG00220003690	pseudogene	Chr11:17041082-17041304 (+)
BALB/cJ	ENSMUSG00180004107	pseudogene	Chr11:16949149-16949371 (+)
C3H/HeJ	ENSMUSG00175008200	pseudogene	Chr11:16968705-16968927 (+)
C57BL/6NJ	ENSMUSG00215003455	pseudogene	Chr11:17031899-17032121 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009508	pseudogene	Chr11:16058226-16058472 (+)
CAST/EiJ	ENSTCUG00005007307	pseudogene	Chr11:16915795-16916014 (+)
CBA/J	ENSMUSG00210009644	pseudogene	Chr11:16943401-16943623 (+)
DBA/2J	ENSMUSG00185012104	pseudogene	Chr11:17060122-17060344 (+)
FVB/NJ	ENSMUSG00205005137	pseudogene	Chr11:16992822-16993044 (+)
JF1/MsJ	ENSUMUG00000006164	pseudogene	Chr11:17247627-17247847 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008772	pseudogene	Chr11:17063470-17063692 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010011982	pseudogene	Chr11:16903415-16903637 (+)
SPRET/EiJ	ENSMSPG00010018819	pseudogene	Chr11:17181518-17181723 (+)
WSB/EiJ	ENSIUOG00005010140	pseudogene	Chr11:17007218-17007440 (+)

Homology

• Gene Tree
  Gm12030
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12030
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081346 (Evidence)
• NCBI Gene
  108167861

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081346	Ensembl Gene Model | MGI Sequence Detail	223	C57BL/6J
transcript	ENSMUST00000121917	Ensembl | MGI Sequence Detail	223	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100493	Chr11:20090562-20090584 (+)	-1,995 bp