Gm12827 Gene Detail

Summary

• Symbol
  Gm12827
• Name
  predicted gene 12827

• Feature Type
  lncRNA gene
• IDs
  MGI:3651358
  NCBI Gene: 102637578
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:117352364-117362123 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.46 cM

Strain
Comparison

• SNPs within 2kb
  247 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651358	lncRNA gene	Chr4:117352364-117375770 (+)
129S1/SvImJ	ENSMUSG00200050268	lncRNA gene	Chr4:111250291-111258308 (+)
A/J	ENSMUSG00195034164	lncRNA gene	Chr4:112510522-112518526 (+)
AKR/J	ENSMUSG00220012760	lncRNA gene	Chr4:111864932-111872892 (+)
BALB/cJ	ENSMUSG00180047507	lncRNA gene	Chr4:110578403-110586367 (+)
C3H/HeJ	ENSMUSG00175042300	lncRNA gene	Chr4:111592711-111600675 (+)
C57BL/6NJ	ENSMUSG00215038481	lncRNA gene	Chr4:112678161-112686161 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005907	lincRNA gene	Chr4:107945402-107949749 (+)
CAST/EiJ	ENSTCUG00005022561	lncRNA gene	Chr4:111377300-111385259 (+)
CBA/J	ENSMUSG00210053452	lncRNA gene	Chr4:111206411-111214375 (+)
DBA/2J	ENSMUSG00185047657	lncRNA gene	Chr4:112736089-112744094 (+)
FVB/NJ	ENSMUSG00205043540	lncRNA gene	Chr4:110675809-110683775 (+)
JF1/MsJ	ENSUMUG00000026901	lncRNA gene	Chr4:112643082-112651112 (+)
LP/J	ENSMUSG00230047222	lncRNA gene	Chr4:116067477-116075496 (+)
NOD/ShiLtJ	ENSMUSG00190047793	lncRNA gene	Chr4:110579348-110587322 (+)
NZO/HlLtJ	ENSMUSG00225011149	lncRNA gene	Chr4:121550153-121558178 (+)
PWK/PhJ	ENSLUMG00010048352	lncRNA gene	Chr4:110041905-110049881 (+)
SPRET/EiJ	ENSMSPG00010029745	lncRNA gene	Chr4:112139284-112147336 (+)
WSB/EiJ	ENSIUOG00005045271	lncRNA gene	Chr4:110897398-110905504 (+)

Homology

• Gene Tree
  Gm12827
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  2
• Gene trapped
  7
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12827
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  5

• Ensembl
  ENSMUSG00000087228 (Evidence)
• NCBI Gene
  102637578

Representative Sequences			Length	Strain/Species
genomic	102637578	NCBI Gene Model | MGI Sequence Detail	9760	C57BL/6J
transcript	XR_868033	RefSeq | MGI Sequence Detail	2611	C57BL/6J

References

• Summaries
  All 16

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12827:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38615	Chr4:117353617-117353660 (+)	1,275 bp