Slc36a3os Gene Detail

Summary

• Symbol
  Slc36a3os
• Name
  solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
• Synonyms
  Gm12233

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651340
  NCBI Gene: 102634079
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:55027825-55031020 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 32.13 cM

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651340	antisense lncRNA gene	Chr11:55022267-55031023 (+)
129S1/SvImJ	ENSMUSG00200037031	lncRNA gene	Chr11:52025664-52028664 (+)
A/J	ENSMUSG00195044309	lncRNA gene	Chr11:51963054-51966054 (+)
AKR/J	ENSMUSG00220050193	lncRNA gene	Chr11:52157603-52160791 (+)
BALB/cJ	ENSMUSG00180051305	lncRNA gene	Chr11:52026859-52030046 (+)
C3H/HeJ	ENSMUSG00175048186	lncRNA gene	Chr11:51994317-51997317 (+)
C57BL/6NJ	ENSMUSG00215039340	lncRNA gene	Chr11:51815814-51819001 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002611	antisense lncRNA gene	Chr11:50047060-50049842 (+)
CAST/EiJ	ENSTCUG00005043903	lncRNA gene	Chr11:51585446-51588433 (+)
CBA/J	ENSMUSG00210038751	lncRNA gene	Chr11:51850163-51853163 (+)
DBA/2J	ENSMUSG00185044388	lncRNA gene	Chr11:52059789-52062977 (+)
FVB/NJ	ENSMUSG00205051404	lncRNA gene	Chr11:51894902-51897904 (+)
JF1/MsJ	ENSUMUG00000052969	lncRNA gene	Chr11:52435793-52438794 (+)
LP/J	ENSMUSG00230050238	lncRNA gene	Chr11:53243268-53246268 (+)
NOD/ShiLtJ	ENSMUSG00190051591	lncRNA gene	Chr11:52105592-52108592 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036038	lncRNA gene	Chr11:51881907-51884732 (+)
SPRET/EiJ	ENSMSPG00010041170	lncRNA gene	Chr11:52571221-52574235 (+)
WSB/EiJ	ENSIUOG00005038123	lncRNA gene	Chr11:51905225-51908158 (+)

Homology

• Gene Tree
  Slc36a3os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  18
• Chemically induced (other)
  1
• Gene trapped
  16
• Targeted
  1
• Genomic Mutations
  2 involving Slc36a3os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085531 (Evidence)
• NCBI Gene
  102634079

Representative Sequences			Length	Strain/Species
genomic	102634079	NCBI Gene Model | MGI Sequence Detail	3196	C57BL/6J
transcript	NR_167707	RefSeq | MGI Sequence Detail	566	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66

TSS for Slc36a3os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101609	Chr11:55027817-55027845 (+)	6 bp
Tssr101610	Chr11:55027849-55027859 (+)	29 bp