Gm12522 Gene Detail

Summary

• Symbol
  Gm12522
• Name
  predicted gene 12522

• Feature Type
  lncRNA gene
• IDs
  MGI:3651334
  NCBI Gene: 100038453
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:108286593-108291057 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 47.00 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651334	lncRNA gene	Chr3:108241824-108296647 (-)
129S1/SvImJ	ENSMUSG00200036161	lncRNA gene	Chr3:104902606-104907070 (-)
A/J	ENSMUSG00195026430	lncRNA gene	Chr3:105329070-105333536 (-)
AKR/J	ENSMUSG00220034122	lncRNA gene	Chr3:103692705-103697171 (-)
BALB/cJ	ENSMUSG00180019746	lncRNA gene	Chr3:105275115-105279593 (-)
C3H/HeJ	ENSMUSG00175030519	lncRNA gene	Chr3:104809160-104813625 (-)
C57BL/6NJ	ENSMUSG00215035619	lncRNA gene	Chr3:105537038-105541504 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013646	unclassified non-coding RNA gene	Chr3:102587387-102591875 (-)
CAST/EiJ	ENSTCUG00005026882	lncRNA gene	Chr3:105810468-105814943 (-)
CBA/J	ENSMUSG00210008776	lncRNA gene	Chr3:105431037-105435501 (-)
DBA/2J	ENSMUSG00185022956	lncRNA gene	Chr3:105900373-105904839 (-)
FVB/NJ	ENSMUSG00205030086	lncRNA gene	Chr3:104467031-104471494 (-)
JF1/MsJ	ENSUMUG00000005871	lncRNA gene	Chr3:104870562-104875040 (-)
LP/J	ENSMUSG00230021511	lncRNA gene	Chr3:107815600-107820064 (-)
NOD/ShiLtJ	ENSMUSG00190042509	lncRNA gene	Chr3:106138445-106142909 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024700	lncRNA gene	Chr3:104734402-104738887 (-)
SPRET/EiJ	ENSMSPG00010036004	lncRNA gene	Chr3:105239305-105243860 (-)
WSB/EiJ	ENSIUOG00005004763	lncRNA gene	Chr3:105454748-105459213 (-)

Homology

• Gene Tree
  Gm12522
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12522
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074281 (Evidence)
• NCBI Gene
  100038453

Representative Sequences			Length	Strain/Species
genomic	100038453	NCBI Gene Model | MGI Sequence Detail	4465	C57BL/6J
transcript	NR_040560	RefSeq | MGI Sequence Detail	2439	C57BL/6
polypeptide	Q3UNE3	UniProt | EBI | MGI Sequence Detail	82	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 5
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35142	Chr3:108289816-108289857 (-)	1,220 bp