Gm11212 Pseudogene Detail

Summary

• Symbol
  Gm11212
• Name
  predicted gene 11212

• Feature Type
  pseudogene
• IDs
  MGI:3651243
  NCBI Gene: 435786
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:63268648-63272083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 33.96 cM

Strain
Comparison

• SNPs within 2kb
  309 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651243	pseudogene	Chr4:63268610-63272194 (+)
129S1/SvImJ	ENSMUSG00200004752	pseudogene	Chr4:58242163-58245598 (+)
A/J	ENSMUSG00195008595	pseudogene	Chr4:58825382-58828817 (+)
AKR/J	ENSMUSG00220006477	pseudogene	Chr4:58634020-58637455 (+)
BALB/cJ	ENSMUSG00180031471	pseudogene	Chr4:57811235-57814670 (+)
C3H/HeJ	ENSMUSG00175022719	pseudogene	Chr4:58593998-58597433 (+)
C57BL/6NJ	ENSMUSG00215032190	pseudogene	Chr4:58665243-58668678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008550	pseudogene	Chr4:58407191-58410622 (+)
CBA/J	ENSMUSG00210006284	pseudogene	Chr4:58344951-58348386 (+)
DBA/2J	ENSMUSG00185019228	pseudogene	Chr4:58761361-58764796 (+)
FVB/NJ	ENSMUSG00205021251	pseudogene	Chr4:57033991-57037427 (+)
JF1/MsJ	ENSUMUG00000028476	pseudogene	Chr4:59391540-59394961 (+)
LP/J	ENSMUSG00230011234	pseudogene	Chr4:62252069-62255504 (+)
NOD/ShiLtJ	ENSMUSG00190040019	pseudogene	Chr4:57743607-57747042 (+)
NZO/HlLtJ	ENSMUSG00225013625	pseudogene	Chr4:67280257-67283692 (+)
PWK/PhJ	ENSLUMG00010007966	pseudogene	Chr4:57018393-57021814 (+)
SPRET/EiJ	ENSMSPG00010035159	pseudogene	Chr4:58286988-58290402 (+)
WSB/EiJ	ENSIUOG00005023125	pseudogene	Chr4:58083138-58086574 (+)

Homology

• Gene Tree
  Gm11212
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082141 (Evidence)
• NCBI Gene
  435786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082141	Ensembl Gene Model | MGI Sequence Detail	3436	C57BL/6J
transcript	ENSMUST00000118337	Ensembl | MGI Sequence Detail	618	Not Applicable

References

• Summaries
  All 7
• Earliest
  J:877 Chang CJ, et al., Structure and expression of mouse alpha 1-acid glycoprotein gene-3 (AGP-3). DNA Cell Biol. 1992 May;11(4):315-20

TSS for Gm11212:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37548	Chr4:63268605-63268610 (+)	-40 bp