Gm13998 Pseudogene Detail

Summary

• Symbol
  Gm13998
• Name
  predicted gene 13998

• Feature Type
  pseudogene
• IDs
  MGI:3651215
  NCBI Gene: 101180908
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:119708550-119708884 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.97 cM

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651215	pseudogene	Chr2:119708296-119708933 (-)
129S1/SvImJ	ENSMUSG00200049105	pseudogene	Chr2:116658949-116659283 (-)
A/J	ENSMUSG00195025936	pseudogene	Chr2:116701860-116702194 (-)
AKR/J	ENSMUSG00220043344	pseudogene	Chr2:116623336-116623670 (-)
BALB/cJ	ENSMUSG00180045485	pseudogene	Chr2:116502176-116502510 (-)
C3H/HeJ	ENSMUSG00175028687	pseudogene	Chr2:116966913-116967247 (-)
C57BL/6NJ	ENSMUSG00215031080	pseudogene	Chr2:116625999-116626333 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010785	pseudogene	Chr3:23116927-23117262 (-)
CAST/EiJ	ENSTCUG00005017121	pseudogene	Chr2:115905470-115905804 (-)
CBA/J	ENSMUSG00210007546	pseudogene	Chr2:116807884-116808218 (-)
DBA/2J	ENSMUSG00185048901	pseudogene	Chr2:116499905-116500239 (-)
FVB/NJ	ENSMUSG00205042259	pseudogene	Chr2:115724119-115724453 (-)
JF1/MsJ	ENSUMUG00000042565	pseudogene	Chr2:116375135-116375469 (-)
LP/J	ENSMUSG00230023928	pseudogene	Chr2:118318621-118318955 (-)
NOD/ShiLtJ	ENSMUSG00190047315	pseudogene	Chr2:116736083-116736417 (-)
NZO/HlLtJ	ENSMUSG00225004490	pseudogene	Chr2:126214449-126214783 (-)
PWK/PhJ	ENSLUMG00010048643	pseudogene	Chr2:116275540-116275874 (-)
SPRET/EiJ	ENSMSPG00010045376	pseudogene	Chr2:118691385-118691719 (-)
WSB/EiJ	ENSIUOG00005029260	pseudogene	Chr2:116469756-116470090 (-)

Homology

• Gene Tree
  Gm13998
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13998
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081056 (Evidence)
• NCBI Gene
  101180908

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081056	Ensembl Gene Model | MGI Sequence Detail	335	C57BL/6J
transcript	ENSMUST00000120952	Ensembl | MGI Sequence Detail	335	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm13998:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25830	Chr2:119708934-119708936 (-)	-51 bp