Gm13904 Pseudogene Detail

Summary

• Symbol
  Gm13904
• Name
  predicted gene 13904

• Feature Type
  pseudogene
• IDs
  MGI:3651201
  NCBI Gene: 383739
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:106841283-106842119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651201	pseudogene	Chr2:106841232-106842294 (+)
129S1/SvImJ	ENSMUSG00200008525	pseudogene	Chr2:103689722-103690558 (+)
A/J	ENSMUSG00195030534	pseudogene	Chr2:103841485-103842321 (+)
AKR/J	ENSMUSG00220005036	pseudogene	Chr2:103586803-103587639 (+)
BALB/cJ	ENSMUSG00180033502	pseudogene	Chr2:103636784-103637620 (+)
C3H/HeJ	ENSMUSG00175032196	pseudogene	Chr2:103959940-103960949 (+)
C57BL/6NJ	ENSMUSG00215026732	pseudogene	Chr2:103730961-103731797 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010575	pseudogene	Chr2:100459743-100460799 (+)
CAST/EiJ	ENSTCUG00005005785	pseudogene	Chr2:103009288-103010297 (+)
CBA/J	ENSMUSG00210038958	pseudogene	Chr2:103914408-103915244 (+)
DBA/2J	ENSMUSG00185040157	pseudogene	Chr2:103633297-103634133 (+)
FVB/NJ	ENSMUSG00205021204	pseudogene	Chr2:102961514-102962350 (+)
JF1/MsJ	ENSUMUG00000004127	pseudogene	Chr2:103369853-103370862 (+)
LP/J	ENSMUSG00230006329	pseudogene	Chr2:105381534-105382370 (+)
NOD/ShiLtJ	ENSMUSG00190016082	pseudogene	Chr2:103758657-103759493 (+)
NZO/HlLtJ	ENSMUSG00225012816	pseudogene	Chr2:113281338-113282174 (+)
PWK/PhJ	ENSLUMG00010003694	pseudogene	Chr2:103364077-103365086 (+)
SPRET/EiJ	ENSMSPG00010038743	pseudogene	Chr2:105444813-105445820 (+)
WSB/EiJ	ENSIUOG00005033069	pseudogene	Chr2:103424015-103425048 (+)

Homology

• Gene Tree
  Gm13904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm13904
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082066 (Evidence)
• NCBI Gene
  383739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082066	Ensembl Gene Model | MGI Sequence Detail	837	C57BL/6J
transcript	ENSMUST00000121901	Ensembl | MGI Sequence Detail	837	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88

TSS for Gm13904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19290	Chr2:106841229-106841238 (+)	-49 bp
Tssr19291	Chr2:106841395-106841415 (+)	122 bp