Gm13669 Pseudogene Detail

Summary

• Symbol
  Gm13669
• Name
  predicted gene 13669

• Feature Type
  pseudogene
• IDs
  MGI:3651174
  NCBI Gene: 623453
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:75638702-75639158 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.77 cM

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651174	pseudogene	Chr2:75638578-75639195 (+)
129S1/SvImJ	ENSMUSG00200004586	pseudogene	Chr2:72683994-72684450 (+)
A/J	ENSMUSG00195020141	pseudogene	Chr2:72830831-72831287 (+)
AKR/J	ENSMUSG00220002497	pseudogene	Chr2:72796608-72797064 (+)
BALB/cJ	ENSMUSG00180007214	pseudogene	Chr2:72784504-72784960 (+)
C3H/HeJ	ENSMUSG00175012048	pseudogene	Chr2:72907762-72908218 (+)
C57BL/6NJ	ENSMUSG00215029612	pseudogene	Chr2:72751024-72751480 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031474	pseudogene	Chr2:72224676-72225134 (+)
CBA/J	ENSMUSG00210002551	pseudogene	Chr2:72948817-72949273 (+)
DBA/2J	ENSMUSG00185011683	pseudogene	Chr2:72784646-72785102 (+)
FVB/NJ	ENSMUSG00205020801	pseudogene	Chr2:72241931-72242387 (+)
JF1/MsJ	ENSUMUG00000043744	pseudogene	Chr2:72483231-72483689 (+)
LP/J	ENSMUSG00230027037	pseudogene	Chr2:74589065-74589521 (+)
NOD/ShiLtJ	ENSMUSG00190010945	pseudogene	Chr2:72855899-72856357 (+)
NZO/HlLtJ	ENSMUSG00225003777	pseudogene	Chr2:82353836-82354292 (+)
PWK/PhJ	ENSLUMG00010034999	pseudogene	Chr2:72711386-72711844 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011498	pseudogene	Chr2:72908720-72909178 (+)

Homology

• Gene Tree
  Gm13669
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13669
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081833 (Evidence)
• NCBI Gene
  623453

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081833	Ensembl Gene Model | MGI Sequence Detail	457	C57BL/6J
transcript	ENSMUST00000122366	Ensembl | MGI Sequence Detail	457	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13669:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18469	Chr2:75638590-75638614 (+)	-100 bp