Gm12999 Gene Detail

Summary

• Symbol
  Gm12999
• Name
  predicted gene 12999

• Feature Type
  lncRNA gene
• IDs
  MGI:3651167
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:132259946-132261367 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.51 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651167	lncRNA gene	Chr4:132259946-132261367 (+)
129S1/SvImJ	ENSMUSG00200021118	lncRNA gene	Chr4:125714810-125715986 (+)
A/J	ENSMUSG00195044259	lncRNA gene	Chr4:127039102-127040278 (+)
AKR/J	ENSMUSG00220047708	lncRNA gene	Chr4:126030867-126032043 (+)
BALB/cJ	ENSMUSG00180050533	lncRNA gene	Chr4:124672898-124674074 (+)
C3H/HeJ	ENSMUSG00175047740	lncRNA gene	Chr4:125685237-125686413 (+)
C57BL/6NJ	ENSMUSG00215052751	lncRNA gene	Chr4:127189184-127190360 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003570	antisense lncRNA gene	Chr4:122172867-122173780 (+)
CAST/EiJ	ENSTCUG00005049187	lncRNA gene	Chr4:126588170-126589346 (+)
CBA/J	ENSMUSG00210053888	lncRNA gene	Chr4:125314230-125315406 (+)
DBA/2J	ENSMUSG00185052910	lncRNA gene	Chr4:126846617-126847793 (+)
FVB/NJ	ENSMUSG00205047699	lncRNA gene	Chr4:125088309-125089485 (+)
JF1/MsJ	ENSUMUG00000045428	lncRNA gene	Chr4:127515805-127516981 (+)
LP/J	ENSMUSG00230038813	lncRNA gene	Chr4:130653283-130654459 (+)
NOD/ShiLtJ	ENSMUSG00190048685	lncRNA gene	Chr4:125078929-125080105 (+)
NZO/HlLtJ	ENSMUSG00225026715	lncRNA gene	Chr4:136557235-136558411 (+)
PWK/PhJ	ENSLUMG00010050035	lncRNA gene	Chr4:124531609-124532785 (+)
SPRET/EiJ	ENSMSPG00010046320	lncRNA gene	Chr4:126602596-126603771 (+)
WSB/EiJ	ENSIUOG00005044780	lncRNA gene	Chr4:124976777-124977952 (+)

Homology

• Gene Tree
  Gm12999
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  87
• Chemically induced (other)
  2
• Gene trapped
  83
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12999
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  606
• Tissues
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000087352 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087352	Ensembl Gene Model | MGI Sequence Detail	1422	C57BL/6J
transcript	ENSMUST00000247121	Ensembl | MGI Sequence Detail	1394	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for Gm12999:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39373	Chr4:132258050-132258065 (+)	-1,888 bp
Tssr39374	Chr4:132259985-132260012 (+)	53 bp
Tssr39375	Chr4:132260020-132260035 (+)	82 bp